Homologs in group_1

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27 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09470 FBDBKF_09470 25.6 Morganella morganii S1 hipB Transcriptional regulator, contains XRE-family HTH domain
FBDBKF_09495 FBDBKF_09495 27.4 Morganella morganii S1 hipB Transcriptional regulator, contains XRE-family HTH domain
FBDBKF_20005 FBDBKF_20005 30.0 Morganella morganii S1 - HTH cro/C1-type domain-containing protein
FBDBKF_20070 FBDBKF_20070 34.7 Morganella morganii S1 - HTH cro/C1-type domain-containing protein
EHELCC_03460 EHELCC_03460 34.7 Morganella morganii S2 - HTH cro/C1-type domain-containing protein
EHELCC_03525 EHELCC_03525 30.0 Morganella morganii S2 - HTH cro/C1-type domain-containing protein
EHELCC_09915 EHELCC_09915 27.4 Morganella morganii S2 hipB Transcriptional regulator, contains XRE-family HTH domain
EHELCC_09940 EHELCC_09940 25.6 Morganella morganii S2 hipB Transcriptional regulator, contains XRE-family HTH domain
NLDBIP_03460 NLDBIP_03460 34.7 Morganella morganii S4 - HTH cro/C1-type domain-containing protein
NLDBIP_03525 NLDBIP_03525 30.0 Morganella morganii S4 - HTH cro/C1-type domain-containing protein
NLDBIP_10285 NLDBIP_10285 25.6 Morganella morganii S4 hipB Transcriptional regulator, contains XRE-family HTH domain
NLDBIP_19235 NLDBIP_19235 27.4 Morganella morganii S4 hipB Transcriptional regulator, contains XRE-family HTH domain
LHKJJB_09290 LHKJJB_09290 34.7 Morganella morganii S3 - HTH cro/C1-type domain-containing protein
LHKJJB_09355 LHKJJB_09355 30.0 Morganella morganii S3 - HTH cro/C1-type domain-containing protein
LHKJJB_11070 LHKJJB_11070 25.6 Morganella morganii S3 hipB Transcriptional regulator, contains XRE-family HTH domain
LHKJJB_19135 LHKJJB_19135 27.4 Morganella morganii S3 hipB Transcriptional regulator, contains XRE-family HTH domain
HKOGLL_09620 HKOGLL_09620 30.0 Morganella morganii S5 - HTH cro/C1-type domain-containing protein
HKOGLL_09685 HKOGLL_09685 34.7 Morganella morganii S5 - HTH cro/C1-type domain-containing protein
HKOGLL_14130 HKOGLL_14130 25.6 Morganella morganii S5 hipB Transcriptional regulator, contains XRE-family HTH domain
HKOGLL_18915 HKOGLL_18915 27.4 Morganella morganii S5 hipB Transcriptional regulator, contains XRE-family HTH domain
F4V73_RS01690 F4V73_RS01690 33.3 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
F4V73_RS08420 F4V73_RS08420 30.2 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
F4V73_RS10485 F4V73_RS10485 28.6 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
F4V73_RS10510 F4V73_RS10510 26.4 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
F4V73_RS19140 F4V73_RS19140 35.6 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
PMI_RS05155 PMI_RS05155 48.1 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator
PMI_RS14845 PMI_RS14845 35.6 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator

Distribution of the homologs in the orthogroup group_1

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q92HV3 3.18e-05 43 36 0 60 4 RC0668 Uncharacterized HTH-type transcriptional regulator RC0668 Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q9ZD50 3.42e-05 43 36 0 60 4 RP497 Uncharacterized HTH-type transcriptional regulator RP497 Rickettsia prowazekii (strain Madrid E)
A7I4Q7 0.000274 41 32 3 79 3 Mboo_0195 Putative HTH-type transcriptional regulatory protein Mboo_0195 Methanoregula boonei (strain DSM 21154 / JCM 14090 / 6A8)
P55681 0.000296 40 30 0 65 4 NGR_a01020 Uncharacterized HTH-type transcriptional regulator y4wC Sinorhizobium fredii (strain NBRC 101917 / NGR234)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS10960
Feature type CDS
Gene -
Product helix-turn-helix transcriptional regulator
Location 2412726 - 2413034 (strand: -1)
Length 309 (nucleotides) / 102 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1
Orthogroup size 28
N. genomes 7

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Genomic region

Domains

PF01381 Helix-turn-helix

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1396 Transcription (K) K Transcriptional regulator, contains XRE-family HTH domain

Protein Sequence

MNIDKNRGSDSLLLRKNIGNFIRESRIRKSLTGAQLGELLDVSQQQISRYENGITSINIETLDMILKLLDADWSEFYRKVLVVDIIKHKLKNSDSFPFYLRV

Flanking regions ( +/- flanking 50bp)

TTAATGAGAATAAAGTAAGTGGTAATTTACATATACGAAGGTGGCTTTTCATGAATATCGATAAGAATAGAGGATCTGATTCTTTATTATTAAGGAAGAATATTGGAAATTTTATTAGAGAATCTCGTATACGTAAATCTCTAACAGGAGCCCAATTAGGCGAATTACTTGATGTGAGTCAGCAACAAATATCAAGATATGAAAATGGAATAACAAGTATCAATATTGAAACATTAGATATGATATTAAAATTATTGGATGCTGACTGGTCTGAGTTTTATCGAAAAGTTCTTGTCGTAGATATTATAAAACATAAATTAAAAAATAGTGATTCGTTTCCATTCTATTTGCGTGTTTAGATGATTTATATCATCTGTATAAATACAGTTTAAATTTTATATAAAAATTT