Homologs in group_2816

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09470 FBDBKF_09470 93.6 Morganella morganii S1 hipB Transcriptional regulator, contains XRE-family HTH domain
EHELCC_09940 EHELCC_09940 93.6 Morganella morganii S2 hipB Transcriptional regulator, contains XRE-family HTH domain
NLDBIP_10285 NLDBIP_10285 93.6 Morganella morganii S4 hipB Transcriptional regulator, contains XRE-family HTH domain
LHKJJB_11070 LHKJJB_11070 93.6 Morganella morganii S3 hipB Transcriptional regulator, contains XRE-family HTH domain
HKOGLL_14130 HKOGLL_14130 93.6 Morganella morganii S5 hipB Transcriptional regulator, contains XRE-family HTH domain

Distribution of the homologs in the orthogroup group_2816

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2816

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10510
Feature type CDS
Gene -
Product helix-turn-helix transcriptional regulator
Location 235643 - 235927 (strand: 1)
Length 285 (nucleotides) / 94 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2816
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF01381 Helix-turn-helix

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1396 Transcription (K) K Transcriptional regulator, contains XRE-family HTH domain

Protein Sequence

MIKNVHPISSVIGQALKSKRRQLGLSGIELSRILSISQQQISRYERGVNCFNLDMLMRYFAALQMTPNDVNNLFSVLGSYYHHKVGETEGRVMQ

Flanking regions ( +/- flanking 50bp)

TTATTCATAACAATAGCAGTCAGCGTGTAATGTAGTCGTCAGGAGGATTTGTGATTAAGAATGTTCATCCTATTTCCAGTGTAATAGGGCAAGCGTTAAAAAGTAAACGTCGTCAGCTCGGGTTATCCGGTATCGAACTTTCCAGAATTCTAAGTATCAGCCAGCAACAAATTTCCCGTTATGAACGGGGGGTTAATTGCTTCAACCTGGATATGCTGATGCGCTATTTTGCCGCATTACAGATGACACCTAATGATGTTAATAATTTATTTTCTGTTCTCGGTAGTTATTATCATCATAAAGTAGGTGAAACAGAAGGAAGAGTCATGCAATAGAATTGTTGTTATTATGAAAAATAATCTAAACAACAATCAAGCATATTTGT