Homologs in group_3694

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3 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS01445 PMI_RS01445 44.9 Proteus mirabilis HI4320 - fimbria/pilus periplasmic chaperone
PMI_RS05170 PMI_RS05170 35.4 Proteus mirabilis HI4320 - fimbrial chaperone
PMI_RS09275 PMI_RS09275 41.9 Proteus mirabilis HI4320 - molecular chaperone

Distribution of the homologs in the orthogroup group_3694

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3694

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P15319 4.23e-111 321 62 0 235 1 papD Chaperone protein PapD Escherichia coli
P53520 7.26e-65 204 42 5 231 3 pmfD Chaperone protein PmfD Proteus mirabilis (strain HI4320)
P77599 4.07e-58 187 40 3 220 2 yfcS Probable fimbrial chaperone YfcS Escherichia coli (strain K12)
P42183 5.29e-50 162 64 1 115 3 prsD Chaperone protein PrsD (Fragment) Escherichia coli
P75749 3.44e-46 156 36 6 236 3 ybgP Uncharacterized fimbrial chaperone YbgP Escherichia coli (strain K12)
P77616 2.88e-38 136 37 6 223 3 yqiH Uncharacterized fimbrial chaperone YqiH Escherichia coli (strain K12)
P33409 2.46e-29 113 34 7 211 3 fimB Chaperone protein FimB/FhaD Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P42914 5.16e-27 106 31 6 218 2 yraI Probable fimbrial chaperone YraI Escherichia coli (strain K12)
P45991 1.03e-24 100 30 8 224 3 hifB Chaperone protein HifB Haemophilus influenzae
P35757 1.27e-24 100 31 8 224 3 hifB Chaperone protein HifB Haemophilus influenzae
P33128 2.84e-24 100 33 10 229 1 yadV Probable fimbrial chaperone YadV Escherichia coli (strain K12)
P25401 2.9e-24 100 30 9 217 1 faeE Chaperone protein FaeE Escherichia coli
P21646 3.54e-24 99 29 9 241 3 mrkB Chaperone protein MrkB Klebsiella pneumoniae
P37923 3.72e-24 99 32 9 229 3 fimC Chaperone protein FimC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q05433 1.72e-23 98 29 9 217 3 clpE Chaperone protein ClpE Escherichia coli
P62609 5.47e-23 96 32 9 219 1 focC Chaperone protein FocC Escherichia coli
P62610 5.47e-23 96 32 9 219 3 focC Chaperone protein FocC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8X5E4 1.01e-22 95 32 10 229 2 elfD Probable fimbrial chaperone protein ElfD Escherichia coli O157:H7
P33342 1.44e-22 95 31 9 226 2 yehC Probable fimbrial chaperone YehC Escherichia coli (strain K12)
P31697 1.53e-22 95 27 6 218 1 fimC Chaperone protein FimC Escherichia coli (strain K12)
P59590 1.89e-22 95 27 6 218 3 fimC Chaperone protein FimC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P75856 3.08e-22 94 32 10 229 2 elfD Probable fimbrial chaperone protein ElfD Escherichia coli (strain K12)
P43661 1.36e-21 92 30 3 168 3 lpfB Chaperone protein LpfB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8X5K6 7.12e-21 90 32 11 229 2 lpfB Probable fimbrial chaperone LpfB Escherichia coli O157:H7
P25402 1.01e-20 90 32 7 175 3 fanE Chaperone protein FanE Escherichia coli
P77249 1.12e-18 84 31 9 229 2 sfmC Probable fimbrial chaperone SfmC Escherichia coli (strain K12)
P40876 5.6e-16 77 27 8 227 2 ycbF Uncharacterized fimbrial chaperone YcbF Escherichia coli (strain K12)
P69966 4.82e-12 67 27 5 176 3 psaB Chaperone protein PsaB Yersinia pseudotuberculosis serotype I (strain IP32953)
P69965 4.82e-12 67 27 5 176 3 psaB Chaperone protein PsaB Yersinia pestis
P33407 1.13e-11 66 27 8 199 3 myfB Chaperone protein MyfB Yersinia enterocolitica
P46004 1.2e-11 65 26 8 218 3 aggD Chaperone protein AggD Escherichia coli
P33387 2.85e-09 58 29 5 171 3 sefB Chaperone protein SefB Salmonella enteritidis
P53516 2.93e-09 58 24 6 194 3 afaB Chaperone protein AfaB Escherichia coli
P26926 3.02e-08 56 24 5 173 1 caf1M Chaperone protein caf1M Yersinia pestis
P15483 7.15e-05 46 27 12 228 3 None Chaperone protein CS3-1 Escherichia coli
P53518 0.000106 45 21 9 234 3 cssC Chaperone protein CssC Escherichia coli

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS10940
Feature type CDS
Gene -
Product fimbria/pilus periplasmic chaperone
Location 2408042 - 2408752 (strand: -1)
Length 711 (nucleotides) / 236 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_3694
Orthogroup size 4
N. genomes 1

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Genomic region

Domains

PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain
PF02753 Pili assembly chaperone PapD, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3121 Extracellular structures (W) W P pilus assembly protein, chaperone PapD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12519 chaperone protein PapD - -

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG042586 fimbria/pilus periplasmic chaperone VF1149 Adherence

Protein Sequence

MKKISFLLLGLMVTSNSYAAISLDRTRAIYEGGSNALVINITNDNKQLPYLAQTWIENDKNEKIELGPLIATPLVQRLEPGDKALIKVSATPDIEKLPNDRETLFYFNVREVPPKAEDNNVLQIALHTKIKLFYRPKQILREPNAIWQDQLVLNKLSDGYEIENPTPYYVTVFGIGGSKKEAVDSEFNAVMIAPKSSQRVNSKVYSTPYLSYINDYGGRPTIKFQCQANRCVAEKK

Flanking regions ( +/- flanking 50bp)

ATTGTGTGAAAAATAAATATCGGTAATTAATAAACGACAAAGGTCTTGAAATGAAAAAAATATCATTTTTATTATTAGGATTAATGGTTACATCAAACTCCTATGCAGCAATTTCTTTAGATAGAACAAGAGCTATATACGAAGGTGGGTCAAATGCATTAGTTATTAATATTACTAATGATAATAAACAATTACCTTATTTAGCCCAAACATGGATTGAAAATGATAAGAATGAAAAAATTGAGCTAGGGCCATTAATTGCCACACCATTAGTTCAGCGATTAGAGCCTGGTGATAAAGCGTTAATTAAAGTATCTGCGACACCAGATATTGAAAAGTTACCTAACGATAGAGAAACATTATTTTATTTTAATGTTAGAGAAGTTCCACCTAAAGCTGAAGACAATAATGTATTACAAATTGCCTTACATACAAAAATAAAATTGTTTTATAGACCGAAACAAATATTGAGAGAGCCAAATGCTATTTGGCAAGATCAATTAGTTTTAAATAAGCTATCTGACGGTTATGAAATAGAGAATCCAACACCTTATTACGTCACTGTATTCGGTATTGGTGGTTCAAAGAAAGAAGCGGTTGATTCTGAGTTTAATGCAGTCATGATTGCCCCTAAATCGTCACAAAGGGTTAATAGTAAAGTGTACTCAACGCCATACTTATCTTATATAAATGATTATGGTGGAAGACCGACAATTAAATTTCAATGTCAAGCTAATCGTTGTGTAGCAGAGAAAAAATAAAAACTGATTTTGGAGATAGAAAGGTGAAGAATAGAAAATTTATTTTTATG