Homologs in group_3694

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3 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS01445 PMI_RS01445 40.8 Proteus mirabilis HI4320 - fimbria/pilus periplasmic chaperone
PMI_RS05170 PMI_RS05170 27.7 Proteus mirabilis HI4320 - fimbrial chaperone
PMI_RS10940 PMI_RS10940 41.9 Proteus mirabilis HI4320 - fimbria/pilus periplasmic chaperone

Distribution of the homologs in the orthogroup group_3694

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3694

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P53520 0.0 521 100 0 254 3 pmfD Chaperone protein PmfD Proteus mirabilis (strain HI4320)
P15319 9.63e-72 222 45 4 231 1 papD Chaperone protein PapD Escherichia coli
P77599 5.25e-60 192 44 4 220 2 yfcS Probable fimbrial chaperone YfcS Escherichia coli (strain K12)
P75749 2.68e-53 175 42 3 219 3 ybgP Uncharacterized fimbrial chaperone YbgP Escherichia coli (strain K12)
P77616 8.1e-38 135 31 7 252 3 yqiH Uncharacterized fimbrial chaperone YqiH Escherichia coli (strain K12)
P43661 1.89e-33 124 36 10 232 3 lpfB Chaperone protein LpfB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P42914 2.83e-33 123 33 8 232 2 yraI Probable fimbrial chaperone YraI Escherichia coli (strain K12)
Q8X5K6 3.27e-31 118 34 9 237 2 lpfB Probable fimbrial chaperone LpfB Escherichia coli O157:H7
P59590 9.48e-29 112 36 6 181 3 fimC Chaperone protein FimC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P31697 1.79e-28 111 36 6 181 1 fimC Chaperone protein FimC Escherichia coli (strain K12)
P37923 2.37e-28 110 33 8 234 3 fimC Chaperone protein FimC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P62609 1.63e-27 108 34 10 230 1 focC Chaperone protein FocC Escherichia coli
P62610 1.63e-27 108 34 10 230 3 focC Chaperone protein FocC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P21646 1.89e-27 108 30 7 223 3 mrkB Chaperone protein MrkB Klebsiella pneumoniae
P77249 7.33e-27 107 34 7 218 2 sfmC Probable fimbrial chaperone SfmC Escherichia coli (strain K12)
P33409 1.51e-26 106 29 8 234 3 fimB Chaperone protein FimB/FhaD Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P75856 1.64e-26 105 33 10 218 2 elfD Probable fimbrial chaperone protein ElfD Escherichia coli (strain K12)
Q8X5E4 1.64e-26 105 34 10 218 2 elfD Probable fimbrial chaperone protein ElfD Escherichia coli O157:H7
P42183 3.16e-26 102 41 3 118 3 prsD Chaperone protein PrsD (Fragment) Escherichia coli
P33342 2.04e-25 103 30 7 225 2 yehC Probable fimbrial chaperone YehC Escherichia coli (strain K12)
P33128 6.75e-25 102 30 9 245 1 yadV Probable fimbrial chaperone YadV Escherichia coli (strain K12)
P45991 1.16e-24 101 31 8 242 3 hifB Chaperone protein HifB Haemophilus influenzae
P35757 1.72e-23 98 31 8 242 3 hifB Chaperone protein HifB Haemophilus influenzae
P25402 1.5e-20 90 34 9 184 3 fanE Chaperone protein FanE Escherichia coli
P69966 5.05e-20 89 32 12 235 3 psaB Chaperone protein PsaB Yersinia pseudotuberculosis serotype I (strain IP32953)
P69965 5.05e-20 89 32 12 235 3 psaB Chaperone protein PsaB Yersinia pestis
P26926 6.05e-20 89 29 7 233 1 caf1M Chaperone protein caf1M Yersinia pestis
P25401 2.34e-19 87 27 7 229 1 faeE Chaperone protein FaeE Escherichia coli
Q05433 3.36e-18 84 27 7 229 3 clpE Chaperone protein ClpE Escherichia coli
P46004 6.82e-17 80 32 8 218 3 aggD Chaperone protein AggD Escherichia coli
P53516 1.21e-16 80 32 8 208 3 afaB Chaperone protein AfaB Escherichia coli
P33407 5.61e-15 75 32 9 187 3 myfB Chaperone protein MyfB Yersinia enterocolitica
P40876 1.71e-14 73 27 11 251 2 ycbF Uncharacterized fimbrial chaperone YcbF Escherichia coli (strain K12)
P15483 1.42e-13 71 32 9 199 3 None Chaperone protein CS3-1 Escherichia coli
P46738 1.72e-12 68 30 8 208 3 nfaE Chaperone protein NfaE Escherichia coli
P33387 1.19e-09 60 25 5 166 3 sefB Chaperone protein SefB Salmonella enteritidis
P53518 2.62e-09 59 21 9 225 3 cssC Chaperone protein CssC Escherichia coli
P53519 1.34e-08 57 22 9 225 3 cssC Chaperone protein CssC Escherichia coli

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS09275
Feature type CDS
Gene -
Product molecular chaperone
Location 2028075 - 2028839 (strand: 1)
Length 765 (nucleotides) / 254 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_3694
Orthogroup size 4
N. genomes 1

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Genomic region

Domains

PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain
PF02753 Pili assembly chaperone PapD, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3121 Extracellular structures (W) W P pilus assembly protein, chaperone PapD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12519 chaperone protein PapD - -

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG042612 molecular chaperone VF1236 Adherence

Protein Sequence

MNSFSTLKTLFCGSLLALSLVNTTQAGVSLDRTRIVLTGNENSASVNLKNTSPDIPFLAQSWVENENGQKISSPLVALPPLQRLDGAQKGVVRITKTAEVGLLPQDRESLFYLNVREIPPAPKQANVLQMAMQSRIKLFYRPSAIVPEKPGMVWQDQLVFKKQGNKFIVNNPTPYYITIISLSNKLNGEDSDKLTTFPGLMVAPKASLDIPVKTSNVNQFYMMYVNDYGGHPELKFVCQQDSCKVAPKDQQPKY

Flanking regions ( +/- flanking 50bp)

CGTTTGTCAGGATCGTTAACAAATAAAATTAATAATGAGAGATAATTAACATGAACTCATTCAGCACACTAAAAACACTATTTTGTGGCTCTTTGCTGGCACTGAGTCTAGTGAATACAACACAAGCGGGTGTTTCACTGGATAGAACTCGTATTGTATTAACGGGTAATGAAAACTCAGCCAGTGTTAATTTAAAAAATACCAGCCCTGATATTCCTTTTTTAGCGCAATCTTGGGTTGAAAATGAAAATGGGCAGAAGATCTCTTCACCCTTAGTGGCACTTCCACCGTTACAACGCCTTGATGGTGCTCAAAAAGGCGTAGTTCGCATTACAAAAACAGCTGAAGTTGGGCTATTACCTCAAGATAGAGAATCACTGTTTTATTTAAATGTGCGTGAAATTCCCCCCGCACCAAAACAAGCCAACGTATTACAGATGGCGATGCAGTCACGCATTAAATTATTCTATCGTCCTAGTGCCATAGTACCTGAAAAACCGGGAATGGTTTGGCAAGATCAACTGGTGTTTAAAAAACAAGGTAATAAATTTATTGTTAATAATCCAACCCCTTATTACATCACGATTATCTCACTTTCTAATAAATTAAATGGTGAGGATAGCGATAAATTAACCACCTTCCCCGGATTAATGGTTGCGCCAAAAGCTTCACTGGATATACCAGTAAAAACCAGTAACGTTAATCAGTTTTATATGATGTATGTAAATGATTACGGTGGACACCCAGAGCTCAAATTTGTATGTCAGCAAGATAGCTGCAAAGTAGCCCCTAAAGATCAACAACCTAAATATTAATAAACTTGATGCCGGTAGGAATAAAATGATCCTCAATAAAAAAAACATTC