Homologs in group_3694

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3 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS05170 PMI_RS05170 32.9 Proteus mirabilis HI4320 - fimbrial chaperone
PMI_RS09275 PMI_RS09275 40.8 Proteus mirabilis HI4320 - molecular chaperone
PMI_RS10940 PMI_RS10940 44.9 Proteus mirabilis HI4320 - fimbria/pilus periplasmic chaperone

Distribution of the homologs in the orthogroup group_3694

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3694

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P15319 2.17e-87 261 50 0 233 1 papD Chaperone protein PapD Escherichia coli
P77599 5.5e-65 205 46 4 221 2 yfcS Probable fimbrial chaperone YfcS Escherichia coli (strain K12)
P53520 6.16e-58 187 39 6 246 3 pmfD Chaperone protein PmfD Proteus mirabilis (strain HI4320)
P75749 1.1e-41 145 36 5 238 3 ybgP Uncharacterized fimbrial chaperone YbgP Escherichia coli (strain K12)
P77616 1.73e-36 132 34 3 208 3 yqiH Uncharacterized fimbrial chaperone YqiH Escherichia coli (strain K12)
P43661 5.73e-33 122 33 5 229 3 lpfB Chaperone protein LpfB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8X5K6 5.73e-33 122 33 9 228 2 lpfB Probable fimbrial chaperone LpfB Escherichia coli O157:H7
P42183 6.23e-32 116 45 1 116 3 prsD Chaperone protein PrsD (Fragment) Escherichia coli
P45991 5e-30 115 34 8 229 3 hifB Chaperone protein HifB Haemophilus influenzae
P35757 3.83e-29 112 34 8 229 3 hifB Chaperone protein HifB Haemophilus influenzae
P59590 1.27e-28 111 30 7 225 3 fimC Chaperone protein FimC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P31697 5.8e-28 109 31 7 225 1 fimC Chaperone protein FimC Escherichia coli (strain K12)
P62609 3.78e-25 102 30 9 224 1 focC Chaperone protein FocC Escherichia coli
P62610 3.78e-25 102 30 9 224 3 focC Chaperone protein FocC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P37923 3.95e-24 99 31 8 232 3 fimC Chaperone protein FimC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P33409 1.21e-23 98 31 12 241 3 fimB Chaperone protein FimB/FhaD Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P33128 1.66e-23 98 32 12 234 1 yadV Probable fimbrial chaperone YadV Escherichia coli (strain K12)
P25401 2.54e-23 97 28 9 219 1 faeE Chaperone protein FaeE Escherichia coli
P33342 1.25e-22 95 30 11 229 2 yehC Probable fimbrial chaperone YehC Escherichia coli (strain K12)
Q05433 7.98e-22 94 27 9 219 3 clpE Chaperone protein ClpE Escherichia coli
P42914 1.6e-21 92 28 4 174 2 yraI Probable fimbrial chaperone YraI Escherichia coli (strain K12)
P77249 6.89e-21 90 30 7 227 2 sfmC Probable fimbrial chaperone SfmC Escherichia coli (strain K12)
P21646 9.99e-21 90 32 11 230 3 mrkB Chaperone protein MrkB Klebsiella pneumoniae
P75856 4.23e-18 83 31 9 213 2 elfD Probable fimbrial chaperone protein ElfD Escherichia coli (strain K12)
Q8X5E4 4.23e-18 83 32 9 213 2 elfD Probable fimbrial chaperone protein ElfD Escherichia coli O157:H7
P25402 5.11e-18 83 29 7 171 3 fanE Chaperone protein FanE Escherichia coli
P40876 2.03e-15 76 28 8 235 2 ycbF Uncharacterized fimbrial chaperone YcbF Escherichia coli (strain K12)
P69966 1.63e-09 60 26 10 225 3 psaB Chaperone protein PsaB Yersinia pseudotuberculosis serotype I (strain IP32953)
P69965 1.63e-09 60 26 10 225 3 psaB Chaperone protein PsaB Yersinia pestis
P26926 6.51e-09 58 23 9 243 1 caf1M Chaperone protein caf1M Yersinia pestis
P53518 9.88e-09 57 26 8 231 3 cssC Chaperone protein CssC Escherichia coli
P53519 1.08e-08 57 25 8 231 3 cssC Chaperone protein CssC Escherichia coli
P33407 1.9e-08 57 27 10 201 3 myfB Chaperone protein MyfB Yersinia enterocolitica
P53516 1.79e-05 48 24 8 197 3 afaB Chaperone protein AfaB Escherichia coli
P15483 0.000105 45 28 8 143 3 None Chaperone protein CS3-1 Escherichia coli
P33387 0.000838 43 25 4 132 3 sefB Chaperone protein SefB Salmonella enteritidis

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS01445
Feature type CDS
Gene -
Product fimbria/pilus periplasmic chaperone
Location 356913 - 357644 (strand: 1)
Length 732 (nucleotides) / 243 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_3694
Orthogroup size 4
N. genomes 1

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Genomic region

Domains

PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain
PF02753 Pili assembly chaperone PapD, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3121 Extracellular structures (W) W P pilus assembly protein, chaperone PapD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12519 chaperone protein PapD - -

Protein Sequence

MFNFSRGLYCILVGYSIFISMAAHSAVTLDRTRIIFPGTEKSINITISNDNPEEAYLAQSWIEDLQGNKLTKGAILATPPLQRIEPNSYSLVRLSTTPELHKLPQDRESVFYFNLREVPPKSTDGNTLQIALQSRVKLFYRPNSILSEAETKWTHKVTLTKTAQGYRVNNITPFNLTIIGFGNSKAAAEKNPFDVVMVPPKSTHDIASSILSTPYLTYINDYGGKPSLVFRCQGDTCVVTGEQ

Flanking regions ( +/- flanking 50bp)

ATTACAGAAAATTAATTATTAATTAAATGTTTTATATTGTGAGGTTAGTTATGTTTAATTTTAGTCGTGGGTTATATTGTATTCTTGTTGGGTATTCCATATTTATTTCGATGGCGGCACATAGTGCTGTGACATTAGATAGAACGCGTATTATTTTCCCTGGAACGGAAAAGTCAATTAATATTACTATTTCTAATGATAATCCTGAAGAAGCTTATCTCGCACAAAGTTGGATAGAAGATTTGCAGGGGAATAAATTAACTAAAGGTGCTATTTTAGCAACGCCTCCATTACAGAGAATCGAGCCAAATAGTTATAGTTTAGTTAGGTTAAGTACAACACCAGAATTACATAAATTACCACAAGATAGAGAGTCGGTATTTTATTTTAATTTACGTGAAGTACCACCGAAATCAACAGATGGCAATACATTACAAATTGCTTTGCAATCTCGTGTAAAACTATTTTATCGTCCAAATAGTATTTTATCTGAAGCAGAAACTAAATGGACACATAAAGTGACATTAACCAAAACGGCTCAAGGCTACCGAGTTAATAATATAACGCCTTTTAATTTAACAATAATTGGATTTGGAAATAGTAAAGCAGCCGCTGAAAAAAATCCTTTTGATGTTGTCATGGTGCCACCTAAATCGACTCATGATATTGCGTCTTCTATATTATCTACACCTTATCTTACTTATATTAATGATTATGGTGGTAAACCATCGTTGGTATTTCGTTGCCAAGGTGATACCTGTGTGGTAACTGGTGAACAATAATTCTTAACAATATTGGAATATAGGAAAAGTAATGAGTAAATATCACGTTT