COG0019


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0019, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Diaminopimelate decarboxylase
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG0019 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2010 FBDBKF_15095 27512 28762 1 lysA diaminopimelate decarboxylase Morganella morganii S1
1 group_2010 EHELCC_11150 56144 57394 -1 lysA diaminopimelate decarboxylase Morganella morganii S2
2 group_2010 NLDBIP_11495 56144 57394 -1 lysA diaminopimelate decarboxylase Morganella morganii S4
3 group_2010 LHKJJB_11355 56144 57394 -1 lysA diaminopimelate decarboxylase Morganella morganii S3
4 group_2010 HKOGLL_09965 56144 57394 -1 lysA diaminopimelate decarboxylase Morganella morganii S5
5 group_2010 F4V73_RS12355 56686 57936 -1 lysA diaminopimelate decarboxylase Morganella psychrotolerans
6 group_4298 PMI_RS01135 279605 281008 1 Y4yA family PLP-dependent enzyme Proteus mirabilis HI4320
7 group_2010 PMI_RS01660 395217 396461 1 lysA diaminopimelate decarboxylase Proteus mirabilis HI4320