Homologs in group_1522

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_04635 EHELCC_04635 100.0 Morganella morganii S2 sdhD succinate dehydrogenase, hydrophobic membrane anchor protein
NLDBIP_04635 NLDBIP_04635 100.0 Morganella morganii S4 sdhD succinate dehydrogenase, hydrophobic membrane anchor protein
LHKJJB_13995 LHKJJB_13995 100.0 Morganella morganii S3 sdhD succinate dehydrogenase, hydrophobic membrane anchor protein
HKOGLL_12540 HKOGLL_12540 100.0 Morganella morganii S5 sdhD succinate dehydrogenase, hydrophobic membrane anchor protein
F4V73_RS00510 F4V73_RS00510 86.6 Morganella psychrotolerans sdhD succinate dehydrogenase membrane anchor subunit
PMI_RS02785 PMI_RS02785 69.3 Proteus mirabilis HI4320 sdhD succinate dehydrogenase membrane anchor subunit

Distribution of the homologs in the orthogroup group_1522

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1522

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AC46 2.27e-39 130 57 1 119 3 sdhD Succinate dehydrogenase hydrophobic membrane anchor subunit Shigella flexneri
P0AC44 2.27e-39 130 57 1 119 1 sdhD Succinate dehydrogenase hydrophobic membrane anchor subunit Escherichia coli (strain K12)
P0AC45 2.27e-39 130 57 1 119 3 sdhD Succinate dehydrogenase hydrophobic membrane anchor subunit Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8X9A9 5.18e-38 127 56 1 119 3 sdhD Succinate dehydrogenase hydrophobic membrane anchor subunit Escherichia coli O157:H7
P51057 1.23e-17 75 30 0 105 1 sdhD Succinate dehydrogenase hydrophobic membrane anchor subunit Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
Q4UKC3 4.86e-05 43 28 3 116 3 sdhD Succinate dehydrogenase hydrophobic membrane anchor subunit Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
P41086 0.000278 41 28 3 92 3 sdhD Succinate dehydrogenase hydrophobic membrane anchor subunit Rickettsia prowazekii (strain Madrid E)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_09835
Feature type CDS
Gene sdhD
Product succinate dehydrogenase, hydrophobic membrane anchor protein
Location 64472 - 64831 (strand: -1)
Length 360 (nucleotides) / 119 (amino acids)

Contig

Accession contig_11
Length 143616 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1522
Orthogroup size 7
N. genomes 7

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Genomic region

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2142 Energy production and conversion (C) C Succinate dehydrogenase, hydrophobic anchor subunit

Kegg Ortholog Annotation(s)

Protein Sequence

MVKNSKISATTLGRNGIQDWLILRASAIVITLYVLYLVGFVAFTSDITYDVWYSFFTASFTQVFTTLTLIAILAHAWVGLWQVLTDYVKCLSLRLLLQFIIIIVLAAYVIYGSIIVWGV

Flanking regions ( +/- flanking 50bp)

ATTTCCATGGTTCTGACTGTGATTTTAGCCGTGTTGGCGGGGGTTCTGGTATGGTGAAAAATTCAAAAATCAGTGCGACCACGCTCGGCCGTAACGGTATTCAGGATTGGTTAATTCTGCGTGCCAGCGCCATTGTGATTACACTTTATGTACTCTACCTCGTCGGTTTTGTGGCTTTTACCTCTGACATCACTTATGACGTCTGGTACAGCTTCTTTACCGCTTCATTCACTCAGGTGTTCACCACCCTGACACTGATCGCCATTCTCGCCCATGCCTGGGTCGGGTTATGGCAGGTACTGACGGATTACGTCAAGTGCCTGAGCCTGCGCCTGCTGCTGCAATTTATTATCATTATTGTGCTGGCAGCCTATGTCATTTACGGTTCAATCATTGTGTGGGGTGTCTAAATGAGCTTACCTGTCAGAGAGTTTGACGCAGTTGTTATCGGTGCAGGCGG