Homologs in group_1522

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09835 FBDBKF_09835 69.3 Morganella morganii S1 sdhD succinate dehydrogenase, hydrophobic membrane anchor protein
EHELCC_04635 EHELCC_04635 69.3 Morganella morganii S2 sdhD succinate dehydrogenase, hydrophobic membrane anchor protein
NLDBIP_04635 NLDBIP_04635 69.3 Morganella morganii S4 sdhD succinate dehydrogenase, hydrophobic membrane anchor protein
LHKJJB_13995 LHKJJB_13995 69.3 Morganella morganii S3 sdhD succinate dehydrogenase, hydrophobic membrane anchor protein
HKOGLL_12540 HKOGLL_12540 69.3 Morganella morganii S5 sdhD succinate dehydrogenase, hydrophobic membrane anchor protein
F4V73_RS00510 F4V73_RS00510 71.1 Morganella psychrotolerans sdhD succinate dehydrogenase membrane anchor subunit

Distribution of the homologs in the orthogroup group_1522

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1522

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AC46 5.31e-45 144 69 1 115 3 sdhD Succinate dehydrogenase hydrophobic membrane anchor subunit Shigella flexneri
P0AC44 5.31e-45 144 69 1 115 1 sdhD Succinate dehydrogenase hydrophobic membrane anchor subunit Escherichia coli (strain K12)
P0AC45 5.31e-45 144 69 1 115 3 sdhD Succinate dehydrogenase hydrophobic membrane anchor subunit Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8X9A9 7.28e-44 141 68 1 115 3 sdhD Succinate dehydrogenase hydrophobic membrane anchor subunit Escherichia coli O157:H7
P51057 1.92e-18 77 36 2 113 1 sdhD Succinate dehydrogenase hydrophobic membrane anchor subunit Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
P41086 2.84e-05 43 30 2 97 3 sdhD Succinate dehydrogenase hydrophobic membrane anchor subunit Rickettsia prowazekii (strain Madrid E)
Q1RHB6 0.000114 42 32 2 87 3 sdhD Succinate dehydrogenase hydrophobic membrane anchor subunit Rickettsia bellii (strain RML369-C)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS02785
Feature type CDS
Gene sdhD
Product succinate dehydrogenase membrane anchor subunit
Location 610643 - 610987 (strand: 1)
Length 345 (nucleotides) / 114 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1522
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2142 Energy production and conversion (C) C Succinate dehydrogenase, hydrophobic anchor subunit

Kegg Ortholog Annotation(s)

Protein Sequence

MVSNSSTLGRTGIQDWLFLRATAIIIFLYVLYFVGFVATTDITYEVWRGFFSSSLTKVFTLLTLLSILIHAWIGMWQVLTDYIKPIALRLTLQLIIVIALLVYLIYGTIVVWGV

Flanking regions ( +/- flanking 50bp)

ATTTCAATGATTATTACCGTTATTTTATCAATATTGGCGGGGGTATTAGTATGGTAAGTAATTCTTCTACTTTAGGCCGTACAGGCATACAGGATTGGTTATTCCTACGTGCAACTGCCATCATTATTTTCTTATATGTTTTATATTTTGTCGGTTTTGTTGCAACAACTGATATTACCTATGAAGTTTGGCGTGGATTCTTTAGCTCCTCTCTAACCAAAGTTTTTACCCTATTAACGCTACTTTCTATTCTAATTCATGCATGGATTGGAATGTGGCAAGTGTTAACGGACTATATTAAGCCAATAGCATTACGCTTGACGTTACAACTTATTATTGTCATTGCGCTGTTGGTTTATCTTATTTATGGAACAATTGTGGTGTGGGGTGTGTAATGAATCTGCCAGTTAGAGAATTTGACGCAGTTGTAATTGGTGCTGGTGGT