COG2142


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2142, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Succinate dehydrogenase, hydrophobic anchor subunit
Function(s) descr. Energy production and conversion (C)

Occurence in the database

COG2142 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1522 FBDBKF_09835 64472 64831 -1 sdhD succinate dehydrogenase, hydrophobic membrane anchor protein Morganella morganii S1
1 group_1522 EHELCC_04635 256437 256796 -1 sdhD succinate dehydrogenase, hydrophobic membrane anchor protein Morganella morganii S2
2 group_1522 NLDBIP_04635 256233 256592 -1 sdhD succinate dehydrogenase, hydrophobic membrane anchor protein Morganella morganii S4
3 group_1522 LHKJJB_13995 78786 79145 1 sdhD succinate dehydrogenase, hydrophobic membrane anchor protein Morganella morganii S3
4 group_1522 HKOGLL_12540 65253 65612 -1 sdhD succinate dehydrogenase, hydrophobic membrane anchor protein Morganella morganii S5
5 group_1522 F4V73_RS00510 107600 107959 1 sdhD succinate dehydrogenase membrane anchor subunit Morganella psychrotolerans
6 group_1522 PMI_RS02785 610643 610987 1 sdhD succinate dehydrogenase membrane anchor subunit Proteus mirabilis HI4320