Homologs in group_1190

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_04100 EHELCC_04100 100.0 Morganella morganii S2 gndA NADP-dependent phosphogluconate dehydrogenase
NLDBIP_04100 NLDBIP_04100 100.0 Morganella morganii S4 gndA NADP-dependent phosphogluconate dehydrogenase
LHKJJB_09930 LHKJJB_09930 100.0 Morganella morganii S3 gndA NADP-dependent phosphogluconate dehydrogenase
HKOGLL_09045 HKOGLL_09045 100.0 Morganella morganii S5 gndA NADP-dependent phosphogluconate dehydrogenase
F4V73_RS01015 F4V73_RS01015 96.6 Morganella psychrotolerans gndA NADP-dependent phosphogluconate dehydrogenase
PMI_RS03225 PMI_RS03225 88.7 Proteus mirabilis HI4320 gndA NADP-dependent phosphogluconate dehydrogenase

Distribution of the homologs in the orthogroup group_1190

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1190

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P00350 0.0 845 87 2 469 1 gnd 6-phosphogluconate dehydrogenase, decarboxylating Escherichia coli (strain K12)
P37756 0.0 841 86 2 469 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Shigella flexneri
P14062 0.0 841 87 2 469 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P41576 0.0 836 86 2 469 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Klebsiella pneumoniae
P37754 0.0 834 86 2 469 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Escherichia coli
P41581 0.0 800 87 2 446 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating (Fragment) Citrobacter amalonaticus
P41580 0.0 799 87 2 445 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating (Fragment) Shigella sonnei
P41578 0.0 797 86 2 445 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating (Fragment) Shigella boydii
P41579 0.0 796 86 2 445 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating (Fragment) Shigella dysenteriae
P41583 0.0 793 86 2 446 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating (Fragment) Citrobacter freundii
P41582 0.0 792 86 2 446 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating (Fragment) Citrobacter koseri
P41575 0.0 791 86 2 446 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating (Fragment) Raoultella planticola
P41577 0.0 790 86 2 446 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating (Fragment) Raoultella terrigena
P41574 0.0 787 85 2 446 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating (Fragment) Pseudescherichia vulneris
P80859 0.0 704 71 1 469 1 gndA 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating Bacillus subtilis (strain 168)
P57208 0.0 692 69 0 466 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q9CHU6 0.0 678 69 3 469 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Lactococcus lactis subsp. lactis (strain IL1403)
P96789 0.0 671 69 3 469 1 gnd 6-phosphogluconate dehydrogenase, decarboxylating Lactococcus lactis subsp. cremoris (strain MG1363)
P63335 0.0 665 68 2 466 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Staphylococcus aureus (strain MW2)
Q6G954 0.0 665 68 2 466 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Staphylococcus aureus (strain MSSA476)
Q6GGI7 0.0 665 68 2 466 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Staphylococcus aureus (strain MRSA252)
P63334 0.0 665 68 2 466 1 gnd 6-phosphogluconate dehydrogenase, decarboxylating Staphylococcus aureus (strain N315)
Q5HFR2 0.0 665 68 2 466 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Staphylococcus aureus (strain COL)
Q931R3 0.0 662 68 2 466 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q9ZHD9 0.0 657 65 3 469 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q89AX5 0.0 641 64 0 466 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q8CP47 0.0 613 68 2 466 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HP42 0.0 613 68 2 466 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
P12013 0.0 560 57 1 464 1 gntZ 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating Bacillus subtilis (strain 168)
P52207 0.0 548 55 1 465 3 gntZ 6-phosphogluconate dehydrogenase, decarboxylating Bacillus licheniformis
P21577 0.0 548 57 3 471 1 gnd 6-phosphogluconate dehydrogenase, decarboxylating Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
P52208 0.0 540 57 6 476 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q8TA03 0.0 540 55 6 476 1 gnd 6-phosphogluconate dehydrogenase, decarboxylating Dictyostelium discoideum
P70718 0.0 531 55 4 468 1 gnd 6-phosphogluconate dehydrogenase, decarboxylating Aggregatibacter actinomycetemcomitans
Q7VMX4 0.0 517 54 4 468 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Haemophilus ducreyi (strain 35000HP / ATCC 700724)
P00349 3.59e-179 513 54 3 469 1 PGD 6-phosphogluconate dehydrogenase, decarboxylating Ovis aries
P52209 3.54e-177 508 54 3 469 1 PGD 6-phosphogluconate dehydrogenase, decarboxylating Homo sapiens
Q9LI00 3.89e-177 508 52 3 473 2 G6PGH1 6-phosphogluconate dehydrogenase, decarboxylating 1 Oryza sativa subsp. japonica
Q17761 2.91e-176 506 51 3 470 3 T25B9.9 6-phosphogluconate dehydrogenase, decarboxylating Caenorhabditis elegans
Q9DCD0 5.66e-176 505 54 3 469 1 Pgd 6-phosphogluconate dehydrogenase, decarboxylating Mus musculus
Q9FWA3 7.89e-176 504 53 5 473 1 PGD2 6-phosphogluconate dehydrogenase, decarboxylating 2 Arabidopsis thaliana
Q94KU1 1.43e-175 504 52 4 472 1 pgdC 6-phosphogluconate dehydrogenase, decarboxylating 1 Spinacia oleracea
Q9FFR3 5.1e-175 503 54 5 472 1 PGD3 6-phosphogluconate dehydrogenase, decarboxylating 3, chloroplastic Arabidopsis thaliana
P85968 5.35e-175 503 53 3 469 1 Pgd 6-phosphogluconate dehydrogenase, decarboxylating Rattus norvegicus
Q9SH69 8.14e-174 499 52 4 472 1 PGD1 6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic Arabidopsis thaliana
O60037 5.9e-173 497 53 3 464 2 6-PGD 6-phosphogluconate dehydrogenase, decarboxylating Cunninghamella elegans
P43774 9.62e-173 497 54 4 468 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O83351 3.47e-172 496 51 5 470 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Treponema pallidum (strain Nichols)
Q94KU2 2.48e-170 493 52 5 477 1 pgdP 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic Spinacia oleracea
P53319 9.67e-170 489 52 4 460 1 GND2 6-phosphogluconate dehydrogenase, decarboxylating 2 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P78812 6.85e-168 485 52 4 459 1 SPBC660.16 6-phosphogluconate dehydrogenase, decarboxylating Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q2R480 7.47e-166 480 50 4 474 2 G6PGH2 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic Oryza sativa subsp. japonica
P41570 3.87e-164 475 52 4 467 2 Pgd 6-phosphogluconate dehydrogenase, decarboxylating Ceratitis capitata
P41572 5.85e-164 474 52 5 469 2 Pgd 6-phosphogluconate dehydrogenase, decarboxylating Drosophila melanogaster
P41573 1.78e-161 468 50 5 469 3 Pgd 6-phosphogluconate dehydrogenase, decarboxylating Drosophila simulans
P38720 2.92e-160 465 51 3 452 1 GND1 6-phosphogluconate dehydrogenase, decarboxylating 1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q9Z8I3 3.92e-160 464 48 3 471 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Chlamydia pneumoniae
O13287 1.88e-159 464 50 4 478 3 DOR14 6-phosphogluconate dehydrogenase, decarboxylating Candida albicans
Q9PKX7 1.41e-157 458 46 4 473 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Chlamydia muridarum (strain MoPn / Nigg)
O84066 5.25e-157 456 47 3 468 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
P31072 1.64e-101 315 38 9 467 1 GND 6-phosphogluconate dehydrogenase, decarboxylating Trypanosoma brucei brucei
P14332 4.12e-82 257 54 2 237 2 PGD 6-phosphogluconate dehydrogenase, decarboxylating (Fragment) Sus scrofa
C8VP36 3.51e-66 223 31 12 473 3 AN10233 6-phosphogluconate dehydrogenase, decarboxylating Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
G5EBD7 5.04e-47 168 31 6 311 1 GOX1705 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating Gluconobacter oxydans (strain 621H)
G5EBD7 4.12e-05 49 21 4 147 1 GOX1705 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating Gluconobacter oxydans (strain 621H)
P54448 2.96e-44 160 33 7 291 3 yqeC Putative 6-phosphogluconate dehydrogenase YqeC Bacillus subtilis (strain 168)
D4GST8 8.64e-44 159 37 7 291 1 gndA 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)
Q9LSV0 2.35e-08 58 23 6 226 1 GLYR1 Glyoxylate/succinic semialdehyde reductase 1 Arabidopsis thaliana
O33730 1.5e-07 56 23 9 272 3 Sfri_1503 Uncharacterized oxidoreductase Sfri_1503 Shewanella frigidimarina (strain NCIMB 400)
P0ABQ2 1.06e-06 53 22 7 258 1 garR 2-hydroxy-3-oxopropionate reductase Escherichia coli (strain K12)
P0ABQ3 1.06e-06 53 22 7 258 3 garR 2-hydroxy-3-oxopropionate reductase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q9V8M5 1.47e-06 53 26 8 224 2 CG15093 Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial Drosophila melanogaster
Q55702 1.92e-06 53 25 4 189 3 slr0229 Uncharacterized oxidoreductase slr0229 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q9SZE1 4.03e-06 52 24 6 256 1 At4g29120 Probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial Arabidopsis thaliana
Q2HJD7 7.24e-06 51 27 7 223 2 HIBADH 3-hydroxyisobutyrate dehydrogenase, mitochondrial Bos taurus
P77161 7.96e-06 51 23 5 200 2 glxR 2-hydroxy-3-oxopropionate reductase Escherichia coli (strain K12)
P31937 1.09e-05 50 27 7 223 1 HIBADH 3-hydroxyisobutyrate dehydrogenase, mitochondrial Homo sapiens
Q5R5E7 1.15e-05 50 27 7 223 2 HIBADH 3-hydroxyisobutyrate dehydrogenase, mitochondrial Pongo abelii
Q0QLF5 1.39e-05 50 24 6 212 1 Hgd 2-(hydroxymethyl)glutarate dehydrogenase Eubacterium barkeri
Q9L7S0 0.000175 47 23 9 252 3 yihU 3-sulfolactaldehyde reductase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
F4I907 0.000183 47 26 7 218 1 GLYR2 Glyoxylate/succinic semialdehyde reductase 2, chloroplastic Arabidopsis thaliana
P29266 0.000735 45 24 5 205 1 Hibadh 3-hydroxyisobutyrate dehydrogenase, mitochondrial Rattus norvegicus
Q99L13 0.000762 45 24 5 205 1 Hibadh 3-hydroxyisobutyrate dehydrogenase, mitochondrial Mus musculus

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_06870
Feature type CDS
Gene gndA
Product NADP-dependent phosphogluconate dehydrogenase
Location 37974 - 39386 (strand: -1)
Length 1413 (nucleotides) / 470 (amino acids)

Contig

Accession contig_7
Length 171383 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1190
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00393 6-phosphogluconate dehydrogenase, C-terminal domain
PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0362 Carbohydrate transport and metabolism (G) G 6-phosphogluconate dehydrogenase

Kegg Ortholog Annotation(s)

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG048941 NADP-dependent phosphogluconate dehydrogenase VF0560 Immune modulation

Protein Sequence

MSKQQIGVVGMAVMGRNLALNIESRGYSVSVFNRSSDKTDEVIAENPGKKLVPSYSIEEFVDSLEKPRRILLMVKAGEATDKTIASLTPHLDKGDILIDGGNTFFQDTIRRNKELSAQGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILKQIAAQAEGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSVLKNALGISNDELASVFSEWNNGELSSYLIDITKDIFRKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGVPLTLITESVFARYISFLKDQRVAASKVLKGPKAAVFSGDKAEFIEKVRRALYLGKIVSYAQGFSQLRVASDEYNWDLNYGEIAKIFRAGCIIRAQFLQKITDAYAENPALANLLLAPYFTQIADEYQQALRDVVCYGVQHGIPTPTFSAAIAYYDSYRSAVLPANLIQAQRDYFGAHTYKRTDKDGVFHTEWLENN

Flanking regions ( +/- flanking 50bp)

CAGCTAACGAAATCGTCGTTAGTCACGGGTCAATTCCTGAAGGAGTCTTCATGTCCAAACAACAAATTGGTGTTGTCGGTATGGCCGTTATGGGCCGTAACCTCGCACTGAATATTGAAAGCCGCGGTTATTCTGTTTCTGTTTTTAACCGCTCTTCAGATAAAACCGATGAAGTGATTGCTGAAAACCCGGGAAAAAAACTGGTTCCCAGCTACAGCATTGAAGAGTTTGTTGACTCCCTGGAAAAACCCCGCCGTATCCTGCTGATGGTCAAAGCCGGTGAAGCCACCGACAAAACCATCGCGTCCCTCACTCCGCATCTCGATAAAGGCGACATTCTGATCGACGGCGGTAACACCTTCTTTCAGGACACCATCCGCCGTAACAAAGAGCTGTCCGCACAGGGCTTTAACTTTATCGGCACCGGCGTTTCCGGTGGTGAGGAAGGCGCACTGAAAGGGCCGTCCATTATGCCGGGCGGACAAAAAGAAGCTTACGAACTGGTTGCCCCGATCCTGAAACAGATCGCGGCACAGGCCGAAGGCGAGCCGTGTGTGACCTATATCGGTGCTGACGGTGCCGGTCATTACGTCAAAATGGTTCACAACGGTATCGAATACGGCGATATGCAGCTGATTGCGGAAGCTTACTCCGTCCTGAAAAATGCCCTCGGCATCAGCAATGATGAACTGGCTTCCGTCTTCAGTGAGTGGAACAACGGCGAACTGAGCAGCTACCTGATTGATATCACAAAAGATATCTTCCGCAAGAAAGATGAAGACGGCAACTATCTGGTGGATGTGATCCTCGATGAAGCCGCTAACAAAGGTACCGGTAAATGGACCAGCCAGAGCGCGCTCGACCTCGGCGTGCCGCTGACACTGATCACCGAATCCGTATTTGCCCGTTATATCTCGTTTCTGAAAGACCAGCGCGTTGCGGCTTCCAAAGTACTGAAAGGACCGAAAGCAGCTGTGTTCAGCGGTGATAAAGCAGAGTTTATTGAAAAAGTCCGCCGCGCCCTGTATCTGGGTAAAATTGTCTCTTATGCTCAGGGCTTCTCACAGCTGCGCGTTGCCTCTGATGAGTACAACTGGGATCTGAACTACGGCGAAATCGCGAAAATTTTCCGCGCCGGTTGTATCATCCGTGCCCAGTTCCTGCAGAAAATCACTGACGCATATGCGGAAAACCCGGCACTGGCTAACCTGCTGCTGGCCCCTTACTTCACACAGATTGCCGATGAATATCAGCAGGCACTGCGTGATGTGGTCTGCTACGGTGTTCAGCACGGTATCCCGACACCGACCTTCTCTGCCGCTATCGCCTATTATGACAGCTACCGCAGCGCGGTACTGCCGGCGAACCTGATCCAGGCACAGCGTGACTATTTCGGTGCACATACTTATAAACGTACTGATAAAGACGGCGTGTTCCACACCGAATGGCTGGAAAATAATTAATTCCTGCCGCTATCCGCATTTGTCAGAGCCGGGATAATTATCCCGGCTTT