Homologs in group_1190

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06870 FBDBKF_06870 96.6 Morganella morganii S1 gndA NADP-dependent phosphogluconate dehydrogenase
EHELCC_04100 EHELCC_04100 96.6 Morganella morganii S2 gndA NADP-dependent phosphogluconate dehydrogenase
NLDBIP_04100 NLDBIP_04100 96.6 Morganella morganii S4 gndA NADP-dependent phosphogluconate dehydrogenase
LHKJJB_09930 LHKJJB_09930 96.6 Morganella morganii S3 gndA NADP-dependent phosphogluconate dehydrogenase
HKOGLL_09045 HKOGLL_09045 96.6 Morganella morganii S5 gndA NADP-dependent phosphogluconate dehydrogenase
PMI_RS03225 PMI_RS03225 88.7 Proteus mirabilis HI4320 gndA NADP-dependent phosphogluconate dehydrogenase

Distribution of the homologs in the orthogroup group_1190

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1190

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P00350 0.0 832 85 2 469 1 gnd 6-phosphogluconate dehydrogenase, decarboxylating Escherichia coli (strain K12)
P37756 0.0 829 85 2 469 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Shigella flexneri
P14062 0.0 827 85 2 469 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P41576 0.0 822 85 2 469 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Klebsiella pneumoniae
P37754 0.0 821 84 2 469 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Escherichia coli
P41581 0.0 788 85 2 446 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating (Fragment) Citrobacter amalonaticus
P41580 0.0 785 85 2 445 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating (Fragment) Shigella sonnei
P41578 0.0 782 85 2 445 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating (Fragment) Shigella boydii
P41582 0.0 782 84 2 446 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating (Fragment) Citrobacter koseri
P41579 0.0 781 85 2 445 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating (Fragment) Shigella dysenteriae
P41577 0.0 780 84 2 446 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating (Fragment) Raoultella terrigena
P41583 0.0 780 84 2 446 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating (Fragment) Citrobacter freundii
P41575 0.0 780 84 2 446 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating (Fragment) Raoultella planticola
P41574 0.0 778 84 2 446 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating (Fragment) Pseudescherichia vulneris
P80859 0.0 704 71 1 468 1 gndA 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating Bacillus subtilis (strain 168)
P57208 0.0 692 68 0 466 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q9CHU6 0.0 677 69 3 469 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Lactococcus lactis subsp. lactis (strain IL1403)
P96789 0.0 671 69 3 469 1 gnd 6-phosphogluconate dehydrogenase, decarboxylating Lactococcus lactis subsp. cremoris (strain MG1363)
P63335 0.0 668 68 2 466 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Staphylococcus aureus (strain MW2)
Q6G954 0.0 668 68 2 466 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Staphylococcus aureus (strain MSSA476)
Q6GGI7 0.0 668 68 2 466 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Staphylococcus aureus (strain MRSA252)
P63334 0.0 668 68 2 466 1 gnd 6-phosphogluconate dehydrogenase, decarboxylating Staphylococcus aureus (strain N315)
Q5HFR2 0.0 668 68 2 466 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Staphylococcus aureus (strain COL)
Q931R3 0.0 666 68 2 466 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q9ZHD9 0.0 657 64 3 469 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q89AX5 0.0 629 62 0 466 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q8CP47 0.0 617 68 2 466 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HP42 0.0 617 68 2 466 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
P12013 0.0 558 56 1 462 1 gntZ 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating Bacillus subtilis (strain 168)
P21577 0.0 552 57 3 471 1 gnd 6-phosphogluconate dehydrogenase, decarboxylating Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
P52207 0.0 551 55 1 465 3 gntZ 6-phosphogluconate dehydrogenase, decarboxylating Bacillus licheniformis
Q8TA03 0.0 541 56 6 476 1 gnd 6-phosphogluconate dehydrogenase, decarboxylating Dictyostelium discoideum
P52208 0.0 540 57 6 476 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P70718 0.0 521 54 4 468 1 gnd 6-phosphogluconate dehydrogenase, decarboxylating Aggregatibacter actinomycetemcomitans
P00349 0.0 520 55 3 469 1 PGD 6-phosphogluconate dehydrogenase, decarboxylating Ovis aries
P52209 7.06e-180 515 55 3 469 1 PGD 6-phosphogluconate dehydrogenase, decarboxylating Homo sapiens
Q7VMX4 8.9e-180 514 54 4 468 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Haemophilus ducreyi (strain 35000HP / ATCC 700724)
Q9DCD0 8.31e-179 512 55 3 469 1 Pgd 6-phosphogluconate dehydrogenase, decarboxylating Mus musculus
Q9LI00 3.41e-178 510 52 3 472 2 G6PGH1 6-phosphogluconate dehydrogenase, decarboxylating 1 Oryza sativa subsp. japonica
P85968 1.04e-177 509 55 3 469 1 Pgd 6-phosphogluconate dehydrogenase, decarboxylating Rattus norvegicus
Q94KU1 6.75e-177 507 53 4 471 1 pgdC 6-phosphogluconate dehydrogenase, decarboxylating 1 Spinacia oleracea
Q9FWA3 1.04e-176 507 53 4 472 1 PGD2 6-phosphogluconate dehydrogenase, decarboxylating 2 Arabidopsis thaliana
Q17761 6.9e-176 505 51 3 470 3 T25B9.9 6-phosphogluconate dehydrogenase, decarboxylating Caenorhabditis elegans
Q9FFR3 3.52e-175 503 54 5 472 1 PGD3 6-phosphogluconate dehydrogenase, decarboxylating 3, chloroplastic Arabidopsis thaliana
Q9SH69 3.39e-173 498 52 5 472 1 PGD1 6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic Arabidopsis thaliana
O60037 1.81e-172 496 53 3 464 2 6-PGD 6-phosphogluconate dehydrogenase, decarboxylating Cunninghamella elegans
Q94KU2 3.92e-172 497 53 5 477 1 pgdP 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic Spinacia oleracea
O83351 8.95e-172 494 51 5 470 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Treponema pallidum (strain Nichols)
P43774 4.26e-169 488 53 4 468 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P53319 3.89e-168 485 51 3 458 1 GND2 6-phosphogluconate dehydrogenase, decarboxylating 2 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P78812 5.93e-167 482 52 4 459 1 SPBC660.16 6-phosphogluconate dehydrogenase, decarboxylating Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q2R480 4.92e-165 478 50 3 474 2 G6PGH2 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic Oryza sativa subsp. japonica
P41572 1.02e-164 476 52 5 469 2 Pgd 6-phosphogluconate dehydrogenase, decarboxylating Drosophila melanogaster
P41570 5.36e-164 474 52 4 467 2 Pgd 6-phosphogluconate dehydrogenase, decarboxylating Ceratitis capitata
P41573 1.77e-162 471 51 5 469 3 Pgd 6-phosphogluconate dehydrogenase, decarboxylating Drosophila simulans
O13287 7.86e-160 465 51 4 478 3 DOR14 6-phosphogluconate dehydrogenase, decarboxylating Candida albicans
Q9Z8I3 1.83e-158 460 47 3 469 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Chlamydia pneumoniae
P38720 2.11e-158 461 50 4 472 1 GND1 6-phosphogluconate dehydrogenase, decarboxylating 1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
O84066 6.05e-157 456 47 3 468 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
Q9PKX7 1.8e-156 455 46 4 473 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Chlamydia muridarum (strain MoPn / Nigg)
P31072 8.35e-101 313 37 8 462 1 GND 6-phosphogluconate dehydrogenase, decarboxylating Trypanosoma brucei brucei
P14332 2.74e-83 260 55 2 237 2 PGD 6-phosphogluconate dehydrogenase, decarboxylating (Fragment) Sus scrofa
C8VP36 4.59e-67 226 32 12 473 3 AN10233 6-phosphogluconate dehydrogenase, decarboxylating Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
G5EBD7 2.99e-47 169 31 6 311 1 GOX1705 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating Gluconobacter oxydans (strain 621H)
G5EBD7 1.58e-05 50 21 4 147 1 GOX1705 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating Gluconobacter oxydans (strain 621H)
P54448 3.38e-43 157 33 6 290 3 yqeC Putative 6-phosphogluconate dehydrogenase YqeC Bacillus subtilis (strain 168)
D4GST8 9.55e-43 156 37 7 291 1 gndA 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)
Q9LSV0 1.21e-07 56 23 6 222 1 GLYR1 Glyoxylate/succinic semialdehyde reductase 1 Arabidopsis thaliana
O33730 1.3e-07 56 23 9 272 3 Sfri_1503 Uncharacterized oxidoreductase Sfri_1503 Shewanella frigidimarina (strain NCIMB 400)
P77161 1.07e-06 53 24 5 200 2 glxR 2-hydroxy-3-oxopropionate reductase Escherichia coli (strain K12)
Q55702 1.19e-06 53 25 4 191 3 slr0229 Uncharacterized oxidoreductase slr0229 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q9V8M5 1.85e-06 53 26 7 203 2 CG15093 Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial Drosophila melanogaster
P0ABQ2 1.99e-06 53 22 7 258 1 garR 2-hydroxy-3-oxopropionate reductase Escherichia coli (strain K12)
P0ABQ3 1.99e-06 53 22 7 258 3 garR 2-hydroxy-3-oxopropionate reductase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q9SZE1 5.03e-06 52 24 6 256 1 At4g29120 Probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial Arabidopsis thaliana
Q0QLF5 1.05e-05 50 24 6 212 1 Hgd 2-(hydroxymethyl)glutarate dehydrogenase Eubacterium barkeri
Q2HJD7 1.1e-05 50 27 6 206 2 HIBADH 3-hydroxyisobutyrate dehydrogenase, mitochondrial Bos taurus
Q5R5E7 1.88e-05 50 27 6 206 2 HIBADH 3-hydroxyisobutyrate dehydrogenase, mitochondrial Pongo abelii
P31937 2.01e-05 50 27 6 206 1 HIBADH 3-hydroxyisobutyrate dehydrogenase, mitochondrial Homo sapiens
P29266 0.000703 45 24 5 205 1 Hibadh 3-hydroxyisobutyrate dehydrogenase, mitochondrial Rattus norvegicus
Q99L13 0.000729 45 24 5 205 1 Hibadh 3-hydroxyisobutyrate dehydrogenase, mitochondrial Mus musculus

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS01015
Feature type CDS
Gene gndA
Product NADP-dependent phosphogluconate dehydrogenase
Location 215851 - 217263 (strand: -1)
Length 1413 (nucleotides) / 470 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1190
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00393 6-phosphogluconate dehydrogenase, C-terminal domain
PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0362 Carbohydrate transport and metabolism (G) G 6-phosphogluconate dehydrogenase

Kegg Ortholog Annotation(s)

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG048848 6-phosphogluconate dehydrogenase VF0560 Immune modulation

Protein Sequence

MSKQQIGVVGMAVMGRNLALNIESRGYSVSVFNRSSDKTDEVIAENPGKKLVPSYSIEEFVDSLEKPRRILLMVKAGEATDKTLASLTPHLDKGDILIDGGNTFFQDTIRRNKELSAQGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILKQIAAQVDGEPCVTYIGANGAGHYVKMVHNGIEYGDMQLIAEAYSVMKNALGISNDELAAAFTEWNKGELSSYLIEITADIFRKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGVPLTLITESVFARYISFLKDQRVAASKVLKGPKTAAFSGDKGEFIEKVRRALYLGKIVSYAQGFSQLRVASDEYDWDLNYGEIAKIFRAGCIIRAQFLQKITDAYAENPALANLLLAPYFTQIADEYQQALRDVVCYGVQHGIPTPTFSAAIAYYDSYRSAVLPANLIQAQRDYFGAHTYKRTDKDGVFHTEWLDNN

Flanking regions ( +/- flanking 50bp)

GCAATTAACACTCAGCTAACGAATCACAGATCAATCCTGAAGGAGTCTTCATGTCCAAACAACAAATTGGTGTTGTCGGTATGGCCGTCATGGGCCGTAATCTTGCACTGAATATCGAAAGCCGCGGTTACTCTGTTTCCGTCTTCAACCGCTCTTCAGATAAAACCGATGAAGTGATTGCTGAAAATCCGGGGAAAAAACTGGTTCCCAGCTACAGTATTGAAGAGTTTGTTGACTCCCTCGAAAAACCCCGCCGTATTTTACTGATGGTCAAAGCCGGTGAAGCGACTGACAAAACACTCGCGTCTCTCACCCCGCACCTTGATAAAGGCGATATTCTGATCGACGGCGGTAATACCTTCTTTCAGGATACTATCCGCCGTAATAAAGAACTGTCTGCACAGGGCTTTAATTTTATCGGTACCGGTGTTTCCGGTGGTGAGGAAGGCGCACTGAAAGGCCCTTCTATTATGCCGGGCGGACAAAAAGAAGCCTATGAACTGGTCGCGCCGATCCTGAAACAGATTGCCGCACAGGTCGATGGTGAGCCATGTGTAACCTATATCGGCGCAAACGGTGCGGGCCATTATGTGAAAATGGTACATAACGGCATCGAGTACGGCGATATGCAGCTTATCGCAGAAGCGTATTCAGTCATGAAAAATGCGCTGGGGATCAGTAATGATGAACTGGCAGCGGCGTTCACTGAGTGGAATAAAGGCGAACTGAGCAGCTACCTGATTGAAATCACCGCCGATATCTTCCGTAAAAAAGATGAAGACGGCAACTACCTGGTTGATGTGATCCTCGATGAGGCCGCTAACAAAGGTACCGGTAAATGGACCAGCCAGAGCGCGCTGGATCTGGGTGTGCCGCTGACACTTATTACTGAATCCGTTTTTGCCCGCTATATCTCTTTCCTGAAAGACCAGCGTGTTGCAGCATCCAAAGTGCTGAAAGGACCAAAAACAGCAGCGTTCAGCGGTGATAAAGGCGAATTTATCGAGAAAGTCCGCCGCGCACTGTATCTGGGCAAAATTGTGTCTTATGCACAGGGCTTTTCACAACTGCGTGTGGCATCAGATGAATATGACTGGGATCTGAATTACGGCGAAATTGCCAAAATCTTCCGTGCCGGGTGCATTATCCGCGCGCAGTTCCTGCAAAAAATCACTGATGCGTATGCTGAAAATCCGGCACTGGCTAATCTGCTGCTGGCACCTTACTTCACACAGATTGCTGATGAGTACCAGCAGGCTCTGCGTGATGTTGTCTGCTACGGCGTTCAGCACGGGATCCCGACTCCGACCTTCTCTGCCGCTATCGCATACTACGACAGCTACCGCAGCGCAGTACTGCCGGCGAATCTTATCCAGGCACAGCGTGACTATTTCGGCGCGCATACCTATAAACGCACGGATAAAGATGGCGTGTTCCACACCGAATGGTTAGATAATAACTGATATTATCTGTTCTCTTTCCGGCAAACCGCGCAAGCCTGAAACTTGCGCGG