Homologs in group_1190

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06870 FBDBKF_06870 88.7 Morganella morganii S1 gndA NADP-dependent phosphogluconate dehydrogenase
EHELCC_04100 EHELCC_04100 88.7 Morganella morganii S2 gndA NADP-dependent phosphogluconate dehydrogenase
NLDBIP_04100 NLDBIP_04100 88.7 Morganella morganii S4 gndA NADP-dependent phosphogluconate dehydrogenase
LHKJJB_09930 LHKJJB_09930 88.7 Morganella morganii S3 gndA NADP-dependent phosphogluconate dehydrogenase
HKOGLL_09045 HKOGLL_09045 88.7 Morganella morganii S5 gndA NADP-dependent phosphogluconate dehydrogenase
F4V73_RS01015 F4V73_RS01015 88.7 Morganella psychrotolerans gndA NADP-dependent phosphogluconate dehydrogenase

Distribution of the homologs in the orthogroup group_1190

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1190

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P14062 0.0 827 85 2 469 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P00350 0.0 827 85 2 469 1 gnd 6-phosphogluconate dehydrogenase, decarboxylating Escherichia coli (strain K12)
P41576 0.0 827 85 2 469 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Klebsiella pneumoniae
P37756 0.0 822 85 2 469 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Shigella flexneri
P37754 0.0 820 85 2 469 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Escherichia coli
P41583 0.0 785 85 2 446 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating (Fragment) Citrobacter freundii
P41582 0.0 785 85 2 446 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating (Fragment) Citrobacter koseri
P41580 0.0 779 85 2 445 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating (Fragment) Shigella sonnei
P41581 0.0 777 84 2 446 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating (Fragment) Citrobacter amalonaticus
P41578 0.0 776 85 2 445 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating (Fragment) Shigella boydii
P41577 0.0 776 84 2 446 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating (Fragment) Raoultella terrigena
P41575 0.0 776 84 2 446 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating (Fragment) Raoultella planticola
P41574 0.0 776 84 2 446 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating (Fragment) Pseudescherichia vulneris
P41579 0.0 776 85 2 445 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating (Fragment) Shigella dysenteriae
P80859 0.0 710 71 1 469 1 gndA 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating Bacillus subtilis (strain 168)
P57208 0.0 695 69 0 466 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q9CHU6 0.0 679 69 3 469 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Lactococcus lactis subsp. lactis (strain IL1403)
P96789 0.0 673 69 3 469 1 gnd 6-phosphogluconate dehydrogenase, decarboxylating Lactococcus lactis subsp. cremoris (strain MG1363)
Q9ZHD9 0.0 654 65 3 469 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P63335 0.0 654 66 2 466 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Staphylococcus aureus (strain MW2)
Q6G954 0.0 654 66 2 466 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Staphylococcus aureus (strain MSSA476)
Q6GGI7 0.0 654 66 2 466 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Staphylococcus aureus (strain MRSA252)
P63334 0.0 654 66 2 466 1 gnd 6-phosphogluconate dehydrogenase, decarboxylating Staphylococcus aureus (strain N315)
Q5HFR2 0.0 654 66 2 466 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Staphylococcus aureus (strain COL)
Q931R3 0.0 652 66 2 466 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q89AX5 0.0 629 62 0 466 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q8CP47 0.0 609 66 2 466 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HP42 0.0 609 66 2 466 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
P21577 0.0 554 57 3 471 1 gnd 6-phosphogluconate dehydrogenase, decarboxylating Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
P12013 0.0 551 56 1 464 1 gntZ 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating Bacillus subtilis (strain 168)
P52207 0.0 547 55 1 465 3 gntZ 6-phosphogluconate dehydrogenase, decarboxylating Bacillus licheniformis
Q8TA03 0.0 545 56 6 476 1 gnd 6-phosphogluconate dehydrogenase, decarboxylating Dictyostelium discoideum
P52208 0.0 534 56 6 476 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P70718 0.0 519 54 4 468 1 gnd 6-phosphogluconate dehydrogenase, decarboxylating Aggregatibacter actinomycetemcomitans
P00349 2.18e-180 516 55 3 469 1 PGD 6-phosphogluconate dehydrogenase, decarboxylating Ovis aries
P52209 1.13e-178 512 55 3 469 1 PGD 6-phosphogluconate dehydrogenase, decarboxylating Homo sapiens
Q17761 1.41e-177 509 50 3 470 3 T25B9.9 6-phosphogluconate dehydrogenase, decarboxylating Caenorhabditis elegans
Q9DCD0 3.33e-177 508 54 3 469 1 Pgd 6-phosphogluconate dehydrogenase, decarboxylating Mus musculus
Q9LI00 6.23e-177 507 52 3 473 2 G6PGH1 6-phosphogluconate dehydrogenase, decarboxylating 1 Oryza sativa subsp. japonica
Q9FWA3 1.47e-176 506 53 5 473 1 PGD2 6-phosphogluconate dehydrogenase, decarboxylating 2 Arabidopsis thaliana
Q7VMX4 3.29e-176 505 53 4 468 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Haemophilus ducreyi (strain 35000HP / ATCC 700724)
P85968 5.43e-176 505 54 3 469 1 Pgd 6-phosphogluconate dehydrogenase, decarboxylating Rattus norvegicus
Q94KU1 1.53e-175 504 52 4 472 1 pgdC 6-phosphogluconate dehydrogenase, decarboxylating 1 Spinacia oleracea
O60037 5.38e-174 500 54 3 464 2 6-PGD 6-phosphogluconate dehydrogenase, decarboxylating Cunninghamella elegans
Q9FFR3 1.29e-172 496 52 4 472 1 PGD3 6-phosphogluconate dehydrogenase, decarboxylating 3, chloroplastic Arabidopsis thaliana
Q9SH69 5.13e-171 492 51 3 472 1 PGD1 6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic Arabidopsis thaliana
P53319 2e-170 491 51 3 458 1 GND2 6-phosphogluconate dehydrogenase, decarboxylating 2 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P43774 5.14e-169 487 53 4 468 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q94KU2 1.31e-168 488 51 4 476 1 pgdP 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic Spinacia oleracea
P78812 1.99e-168 486 52 4 459 1 SPBC660.16 6-phosphogluconate dehydrogenase, decarboxylating Schizosaccharomyces pombe (strain 972 / ATCC 24843)
O83351 3.23e-168 485 50 7 473 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Treponema pallidum (strain Nichols)
Q2R480 1.62e-165 479 50 3 474 2 G6PGH2 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic Oryza sativa subsp. japonica
P41572 3.77e-165 477 52 5 469 2 Pgd 6-phosphogluconate dehydrogenase, decarboxylating Drosophila melanogaster
P41570 2.64e-163 473 52 4 467 2 Pgd 6-phosphogluconate dehydrogenase, decarboxylating Ceratitis capitata
P41573 1.24e-162 471 51 5 469 3 Pgd 6-phosphogluconate dehydrogenase, decarboxylating Drosophila simulans
P38720 1.05e-160 466 51 2 451 1 GND1 6-phosphogluconate dehydrogenase, decarboxylating 1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q9PKX7 4.82e-159 462 46 4 476 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Chlamydia muridarum (strain MoPn / Nigg)
Q9Z8I3 1.5e-158 460 47 3 470 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Chlamydia pneumoniae
O13287 2.22e-157 459 51 3 458 3 DOR14 6-phosphogluconate dehydrogenase, decarboxylating Candida albicans
O84066 2.63e-157 457 47 3 467 3 gnd 6-phosphogluconate dehydrogenase, decarboxylating Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
P31072 3.29e-98 306 37 9 465 1 GND 6-phosphogluconate dehydrogenase, decarboxylating Trypanosoma brucei brucei
P14332 1.79e-83 260 54 2 237 2 PGD 6-phosphogluconate dehydrogenase, decarboxylating (Fragment) Sus scrofa
C8VP36 9.46e-75 246 32 13 495 3 AN10233 6-phosphogluconate dehydrogenase, decarboxylating Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
G5EBD7 7e-48 171 31 8 325 1 GOX1705 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating Gluconobacter oxydans (strain 621H)
G5EBD7 2.49e-05 50 21 5 169 1 GOX1705 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating Gluconobacter oxydans (strain 621H)
D4GST8 2.44e-42 155 37 7 291 1 gndA 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)
P54448 9.92e-42 153 34 8 291 3 yqeC Putative 6-phosphogluconate dehydrogenase YqeC Bacillus subtilis (strain 168)
O33730 3.18e-08 58 22 11 314 3 Sfri_1503 Uncharacterized oxidoreductase Sfri_1503 Shewanella frigidimarina (strain NCIMB 400)
Q9LSV0 1.92e-07 56 23 6 226 1 GLYR1 Glyoxylate/succinic semialdehyde reductase 1 Arabidopsis thaliana
O34948 2.57e-07 55 27 10 259 1 ykwC Uncharacterized oxidoreductase YkwC Bacillus subtilis (strain 168)
Q55702 2.68e-07 55 25 7 263 3 slr0229 Uncharacterized oxidoreductase slr0229 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q0QLF5 1.03e-06 53 24 9 264 1 Hgd 2-(hydroxymethyl)glutarate dehydrogenase Eubacterium barkeri
Q9SZE1 4.74e-06 52 23 6 256 1 At4g29120 Probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial Arabidopsis thaliana
Q2HJD7 1.18e-05 50 28 7 219 2 HIBADH 3-hydroxyisobutyrate dehydrogenase, mitochondrial Bos taurus
Q5R5E7 1.34e-05 50 28 7 219 2 HIBADH 3-hydroxyisobutyrate dehydrogenase, mitochondrial Pongo abelii
P31937 1.39e-05 50 28 7 219 1 HIBADH 3-hydroxyisobutyrate dehydrogenase, mitochondrial Homo sapiens
P77161 3.11e-05 49 23 5 200 2 glxR 2-hydroxy-3-oxopropionate reductase Escherichia coli (strain K12)
Q9V8M5 0.00012 47 24 7 203 2 CG15093 Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial Drosophila melanogaster
P0ABQ2 0.000505 45 20 9 272 1 garR 2-hydroxy-3-oxopropionate reductase Escherichia coli (strain K12)
P0ABQ3 0.000505 45 20 9 272 3 garR 2-hydroxy-3-oxopropionate reductase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q99L13 0.000575 45 24 5 205 1 Hibadh 3-hydroxyisobutyrate dehydrogenase, mitochondrial Mus musculus

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS03225
Feature type CDS
Gene gndA
Product NADP-dependent phosphogluconate dehydrogenase
Location 713406 - 714812 (strand: 1)
Length 1407 (nucleotides) / 468 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1190
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00393 6-phosphogluconate dehydrogenase, C-terminal domain
PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0362 Carbohydrate transport and metabolism (G) G 6-phosphogluconate dehydrogenase

Kegg Ortholog Annotation(s)

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG048828 NADP-dependent phosphogluconate dehydrogenase VF0560 Immune modulation

Protein Sequence

MSKQQIGVVGMAVMGRNLALNIESRGYTVSIYNRSSDKTNEVIAENPGKKLVPNYSIEEFVDSLEKPRRILLMVKAGEATDKTIAALTPHLDKGDILIDGGNTFFKDTIRRNRELSAQGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILEKIAAVADGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSVLKHSLGLTNEELADTFTEWNKGELSSYLIEITADIFRKKDEEGNYLVDVILDEAANKGTGKWTSQSSLDLGVPVTLITESVFARYISSLKDQRVAASKVLSGPAPKAFTGDKKAFIENVRRALYLGKIVSYAQGFQQLKAASDEYNWDLNYGEIAKIFRAGCIIRAQFLQKITDAYNDDANIANLLLAPYFKNIADEYQQALRDVVCYGVQAGIPTPTFSAAISYYDSYRAQVLPANLIQAQRDYFGAHTYKRTDKEGVFHTEWME

Flanking regions ( +/- flanking 50bp)

TTGTCAGTACATTGAGACTGGCAGGTTTATATTCAGACGGGAGTTATTTCATGTCAAAACAGCAAATCGGCGTGGTTGGTATGGCAGTGATGGGACGTAACCTTGCGCTAAACATTGAAAGCCGTGGTTACACTGTATCTATCTACAACCGCTCGAGCGATAAAACCAATGAAGTGATCGCTGAAAATCCAGGTAAAAAACTGGTTCCGAATTACTCTATTGAGGAATTTGTTGATTCATTAGAAAAACCGCGTCGTATTTTGTTAATGGTTAAAGCGGGTGAAGCAACAGATAAAACCATCGCAGCCCTGACACCACATTTAGATAAGGGCGATATCCTTATTGATGGCGGAAATACTTTCTTTAAAGATACTATTCGTCGTAATCGTGAGCTATCGGCTCAAGGTTTTAACTTTATTGGTACGGGTGTTTCTGGTGGTGAAGAAGGGGCATTAAAAGGACCTTCTATTATGCCTGGTGGTCAAAAAGAAGCCTATGAGTTAGTTGCTCCTATTCTTGAGAAAATTGCCGCGGTGGCAGATGGCGAGCCTTGTGTCACTTATATTGGTGCAGATGGTGCAGGTCACTATGTGAAAATGGTACACAATGGTATTGAATATGGTGATATGCAACTGATAGCAGAAGCTTATTCAGTATTAAAACACTCACTAGGTTTAACTAACGAAGAGTTAGCTGACACTTTTACCGAGTGGAATAAAGGCGAATTAAGTAGCTACCTTATTGAAATTACTGCTGATATTTTCCGTAAGAAAGATGAAGAAGGTAACTACCTTGTTGATGTTATTCTTGATGAAGCGGCAAATAAAGGCACCGGTAAATGGACTAGCCAAAGCTCTTTAGACTTAGGTGTTCCTGTTACGTTGATTACAGAATCTGTTTTTGCACGTTATATTTCTTCACTGAAAGATCAACGTGTGGCGGCATCTAAAGTATTATCAGGCCCAGCACCAAAAGCATTTACTGGTGATAAAAAAGCCTTTATCGAGAATGTTCGTCGTGCACTATATTTAGGTAAAATTGTCTCTTATGCGCAAGGCTTCCAACAATTGAAAGCTGCATCAGATGAATATAACTGGGATCTAAATTACGGTGAAATTGCGAAAATTTTCCGTGCAGGTTGTATCATTCGTGCTCAATTCTTACAAAAAATCACTGATGCCTATAATGACGATGCGAATATCGCTAATTTATTATTAGCACCTTACTTTAAAAATATCGCTGATGAGTATCAACAAGCATTGCGTGATGTTGTTTGTTATGGTGTTCAAGCAGGTATTCCTACGCCAACATTCTCCGCGGCTATCTCTTATTATGATAGCTACCGTGCGCAAGTGTTACCAGCAAACTTAATTCAAGCACAACGTGACTATTTTGGTGCGCATACTTATAAACGTACTGATAAAGAAGGCGTATTCCATACTGAGTGGATGGAGTAAGTTTTAAAAACAGTGAGTTATAAGTGTTAGGGGTGCTGAATTTCAGCACC