Homologs in group_1473

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09495 FBDBKF_09495 83.5 Morganella morganii S1 hipB Transcriptional regulator, contains XRE-family HTH domain
EHELCC_09915 EHELCC_09915 83.5 Morganella morganii S2 hipB Transcriptional regulator, contains XRE-family HTH domain
NLDBIP_19235 NLDBIP_19235 83.5 Morganella morganii S4 hipB Transcriptional regulator, contains XRE-family HTH domain
LHKJJB_19135 LHKJJB_19135 83.5 Morganella morganii S3 hipB Transcriptional regulator, contains XRE-family HTH domain
HKOGLL_18915 HKOGLL_18915 83.5 Morganella morganii S5 hipB Transcriptional regulator, contains XRE-family HTH domain
F4V73_RS19140 F4V73_RS19140 48.1 Morganella psychrotolerans - helix-turn-helix transcriptional regulator

Distribution of the homologs in the orthogroup group_1473

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1473

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P69736 0.000259 40 38 0 55 1 Edf1 Endothelial differentiation-related factor 1 Rattus norvegicus
Q9JMG1 0.000259 40 38 0 55 1 Edf1 Endothelial differentiation-related factor 1 Mus musculus
Q5ZMC0 0.000864 39 36 0 55 2 EDF1 Endothelial differentiation-related factor 1 homolog Gallus gallus

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10485
Feature type CDS
Gene -
Product helix-turn-helix transcriptional regulator
Location 215299 - 215598 (strand: 1)
Length 300 (nucleotides) / 99 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1473
Orthogroup size 7
N. genomes 6

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Genomic region

Domains

PF01381 Helix-turn-helix

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1396 Transcription (K) K Transcriptional regulator, contains XRE-family HTH domain

Protein Sequence

MCDNTISLSKEVGFFLKRRRKSQGLTGSELAEKLNISQQQISRYERGLSVLSPDVMLRYCAALGMAEREISELFSIISTYYQYAVSEQENIDGFDDTQC

Flanking regions ( +/- flanking 50bp)

CGGATAAACATAAAAGGAGTTAAACATCCTCAGGTAGAACAGGTTTTTCTATGTGTGATAATACTATATCTCTTTCGAAGGAAGTGGGTTTTTTCTTAAAAAGAAGGCGAAAAAGTCAGGGGTTAACCGGTTCGGAACTGGCTGAGAAACTCAATATCAGTCAGCAGCAAATATCCCGCTATGAACGCGGTTTGTCTGTGCTTAGTCCGGATGTCATGCTCAGGTATTGCGCGGCATTGGGAATGGCGGAGCGTGAGATCAGCGAACTTTTCTCCATTATCAGCACATACTATCAGTACGCTGTTTCCGAACAGGAAAATATAGACGGATTTGATGACACACAATGCTGAATATCTATCCGTAATGACTTCCCTCTTTATCTGTTCTTTTGAGCTGACTC