Homologs in group_3042

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_18150 FBDBKF_18150 84.0 Morganella morganii S1 fimC P pilus assembly protein, chaperone PapD
EHELCC_16850 EHELCC_16850 84.0 Morganella morganii S2 fimC P pilus assembly protein, chaperone PapD
NLDBIP_17600 NLDBIP_17600 84.0 Morganella morganii S4 fimC P pilus assembly protein, chaperone PapD
LHKJJB_17520 LHKJJB_17520 84.0 Morganella morganii S3 fimC P pilus assembly protein, chaperone PapD
HKOGLL_17335 HKOGLL_17335 84.0 Morganella morganii S5 fimC P pilus assembly protein, chaperone PapD

Distribution of the homologs in the orthogroup group_3042

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3042

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P77599 4.69e-62 197 45 4 217 2 yfcS Probable fimbrial chaperone YfcS Escherichia coli (strain K12)
P15319 9.61e-62 196 42 5 239 1 papD Chaperone protein PapD Escherichia coli
P53520 9.7e-53 174 38 5 242 3 pmfD Chaperone protein PmfD Proteus mirabilis (strain HI4320)
P75749 2.96e-46 157 36 7 242 3 ybgP Uncharacterized fimbrial chaperone YbgP Escherichia coli (strain K12)
P77616 9.36e-41 143 33 6 245 3 yqiH Uncharacterized fimbrial chaperone YqiH Escherichia coli (strain K12)
P21646 2.34e-33 123 30 8 236 3 mrkB Chaperone protein MrkB Klebsiella pneumoniae
Q8X5K6 1.46e-32 121 34 9 223 2 lpfB Probable fimbrial chaperone LpfB Escherichia coli O157:H7
P37923 3.16e-30 115 35 8 227 3 fimC Chaperone protein FimC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P43661 6.21e-30 114 32 8 230 3 lpfB Chaperone protein LpfB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P45991 6.92e-30 114 34 9 237 3 hifB Chaperone protein HifB Haemophilus influenzae
P35757 2.32e-29 113 33 9 237 3 hifB Chaperone protein HifB Haemophilus influenzae
P62609 2.43e-29 113 36 9 207 1 focC Chaperone protein FocC Escherichia coli
P62610 2.43e-29 113 36 9 207 3 focC Chaperone protein FocC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P59590 9.88e-29 111 33 9 233 3 fimC Chaperone protein FimC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P31697 1.77e-28 111 33 9 233 1 fimC Chaperone protein FimC Escherichia coli (strain K12)
P33409 3.04e-28 110 30 9 240 3 fimB Chaperone protein FimB/FhaD Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P25401 6.14e-27 107 32 11 237 1 faeE Chaperone protein FaeE Escherichia coli
P42914 9.43e-27 106 31 10 242 2 yraI Probable fimbrial chaperone YraI Escherichia coli (strain K12)
P33342 2.41e-26 105 31 8 215 2 yehC Probable fimbrial chaperone YehC Escherichia coli (strain K12)
P33128 9.72e-26 103 33 10 237 1 yadV Probable fimbrial chaperone YadV Escherichia coli (strain K12)
Q05433 1e-25 104 32 11 237 3 clpE Chaperone protein ClpE Escherichia coli
Q8X5E4 4.33e-25 102 30 8 233 2 elfD Probable fimbrial chaperone protein ElfD Escherichia coli O157:H7
P77249 6.86e-25 101 29 7 239 2 sfmC Probable fimbrial chaperone SfmC Escherichia coli (strain K12)
P25402 2.74e-24 99 32 8 220 3 fanE Chaperone protein FanE Escherichia coli
P75856 3.29e-24 99 30 8 233 2 elfD Probable fimbrial chaperone protein ElfD Escherichia coli (strain K12)
P42183 9.13e-18 79 38 3 119 3 prsD Chaperone protein PrsD (Fragment) Escherichia coli
P46004 1.16e-13 71 29 10 215 3 aggD Chaperone protein AggD Escherichia coli
P53516 9.73e-13 68 29 7 200 3 afaB Chaperone protein AfaB Escherichia coli
P33387 6.02e-12 66 28 6 170 3 sefB Chaperone protein SefB Salmonella enteritidis
P26926 1.59e-10 62 25 9 239 1 caf1M Chaperone protein caf1M Yersinia pestis
P46738 4.03e-10 61 29 8 200 3 nfaE Chaperone protein NfaE Escherichia coli
P33407 6.96e-10 61 25 11 236 3 myfB Chaperone protein MyfB Yersinia enterocolitica
P15483 1.5e-08 57 28 9 219 3 None Chaperone protein CS3-1 Escherichia coli
P53519 4.54e-07 52 23 6 181 3 cssC Chaperone protein CssC Escherichia coli
P69966 3.3e-06 50 23 6 168 3 psaB Chaperone protein PsaB Yersinia pseudotuberculosis serotype I (strain IP32953)
P69965 3.3e-06 50 23 6 168 3 psaB Chaperone protein PsaB Yersinia pestis
P40876 7.68e-06 49 25 4 132 2 ycbF Uncharacterized fimbrial chaperone YcbF Escherichia coli (strain K12)
P53518 9.45e-06 48 22 7 191 3 cssC Chaperone protein CssC Escherichia coli

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10355
Feature type CDS
Gene -
Product molecular chaperone
Location 180902 - 181636 (strand: -1)
Length 735 (nucleotides) / 244 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3042
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain
PF02753 Pili assembly chaperone PapD, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3121 Extracellular structures (W) W P pilus assembly protein, chaperone PapD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12519 chaperone protein PapD - -

Protein Sequence

MQKVTTLFCAALTTLALTPLAANAAIALDRTRVIYNEGDKSVPLTVTNEHLSKPYLAQSWIENSAGQKITSPIFVTPPVQRIEANSKSQIKVQLSPEAASLPADRESVFYLNVREIPPAVEKSNVLQIALQTKIKLFYRPKSIQVQDRMEIIDGAQGIRLTQNGGQYTIDNTTAFHLSVTRMEASGGKEVKFDPIMVAPKATATFSAPALGNSPTAYYVNDYGDTKPLKFSCNGSACSVQADNK

Flanking regions ( +/- flanking 50bp)

ACAGACATTGTACATACCCGAATTGACAGATGATCCGTAAGGAAAGATACATGCAAAAAGTAACAACATTATTCTGTGCTGCACTGACGACTCTGGCATTAACACCACTGGCGGCCAATGCGGCAATCGCACTGGACAGAACCCGCGTAATTTATAATGAAGGTGATAAATCTGTTCCGCTGACCGTGACAAATGAACACCTCAGCAAACCGTATCTGGCACAATCCTGGATTGAAAACAGCGCAGGTCAGAAAATCACATCGCCTATCTTTGTTACCCCGCCGGTTCAGCGGATTGAAGCGAACAGCAAAAGTCAGATAAAAGTTCAGTTATCACCGGAAGCCGCATCATTACCGGCTGATCGCGAGTCTGTATTTTACCTGAATGTCCGTGAGATCCCGCCTGCTGTAGAGAAAAGCAATGTGCTGCAAATTGCGCTTCAGACAAAAATCAAACTGTTCTATCGCCCTAAATCCATTCAGGTACAGGACAGAATGGAGATTATTGATGGCGCACAGGGTATCCGCCTGACGCAAAATGGCGGGCAATATACCATTGATAATACAACCGCTTTCCACCTTTCAGTAACCCGCATGGAAGCCAGCGGCGGGAAAGAAGTGAAATTCGACCCGATAATGGTGGCACCAAAAGCCACTGCCACTTTCAGTGCCCCGGCTCTGGGTAATTCACCAACGGCTTACTACGTTAATGACTATGGCGATACCAAGCCGCTGAAATTCAGCTGTAACGGAAGTGCCTGTTCCGTACAGGCAGACAATAAATAATCTGCTGAGCAATAAAAGGAGAAACGCCGGTGATCCACTCATTTTTAACC