Homologs in group_50

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13 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08880 FBDBKF_08880 57.0 Morganella morganii S1 fimB Integrase/recombinase, includes phage integrase
FBDBKF_14415 FBDBKF_14415 51.6 Morganella morganii S1 - Integrase arm-type DNA-binding domain-containing protein
FBDBKF_19690 FBDBKF_19690 54.9 Morganella morganii S1 - Integrase
EHELCC_07865 EHELCC_07865 51.6 Morganella morganii S2 - Integrase arm-type DNA-binding domain-containing protein
EHELCC_12645 EHELCC_12645 57.0 Morganella morganii S2 fimB Integrase/recombinase, includes phage integrase
NLDBIP_08190 NLDBIP_08190 51.6 Morganella morganii S4 - Integrase arm-type DNA-binding domain-containing protein
NLDBIP_12985 NLDBIP_12985 57.0 Morganella morganii S4 fimB Integrase/recombinase, includes phage integrase
LHKJJB_06075 LHKJJB_06075 51.6 Morganella morganii S3 - Integrase arm-type DNA-binding domain-containing protein
LHKJJB_13570 LHKJJB_13570 57.0 Morganella morganii S3 fimB Integrase/recombinase, includes phage integrase
HKOGLL_04840 HKOGLL_04840 51.6 Morganella morganii S5 - Integrase arm-type DNA-binding domain-containing protein
HKOGLL_11460 HKOGLL_11460 57.0 Morganella morganii S5 fimB Integrase/recombinase, includes phage integrase
F4V73_RS02510 F4V73_RS02510 40.7 Morganella psychrotolerans - tyrosine-type recombinase/integrase
PMI_RS17290 PMI_RS17290 57.7 Proteus mirabilis HI4320 - integrase arm-type DNA-binding domain-containing protein

Distribution of the homologs in the orthogroup group_50

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_50

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P39347 3.48e-160 459 54 2 391 5 intB Putative protein IntB Escherichia coli (strain K12)
P08320 1.47e-154 447 53 4 415 3 int Integrase Enterobacteria phage P4
P32053 3.75e-69 227 33 7 413 1 intA Prophage integrase IntA Escherichia coli (strain K12)
P76542 1.24e-62 210 34 11 409 3 intZ Prophage integrase IntZ Escherichia coli (strain K12)
P37317 1.25e-55 191 31 9 395 3 int Integrase Shigella phage Sf6
P37326 2.28e-55 191 31 9 395 1 intS Prophage integrase IntS Escherichia coli (strain K12)
P06155 7.22e-12 70 22 8 259 3 int Integrase Enterobacteria phage phi80

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10095
Feature type CDS
Gene -
Product tyrosine-type recombinase/integrase
Location 127299 - 128558 (strand: 1)
Length 1260 (nucleotides) / 419 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_50
Orthogroup size 14
N. genomes 7

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Genomic region

Domains

PF00589 Phage integrase family
PF13356 Arm DNA-binding domain
PF22022 Phage integrase central domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0582 Replication, recombination and repair (L)
Mobilome: prophages, transposons (X)		 LX Integrase/recombinase, includes phage integrase

Protein Sequence

MALSDMAARNAKPGKKMYKLADEYGLYLQVNPIGTKRWYFKFAYNGKESRIAFGAYPLVSLSRARDKRDEARLMILDGIHPKQKRIAEKEAEEDALNTFEKMAREWSQQMLRRRRWSETHANRIWRDMEKHILPAIGQRHVAELKTKDLLIPLRVVEANDRLELASRLKQRITDIMGYAVQCGVIDRNPAKDMAGALMPPRVTHRPALRLERLPEFLTKLDYYYGRRLTKLAIQFTLLTFSRSSEIRLARWSEFDIERAIWIIPAERTPIPGVKFSYRGAKMQSEHIVPLSRQTLAVLAEIRTISGEGELLFPGDHSLIKPMSENTVNNALRTMGYDTAKELCGHGFRTMACSALIESGKWSRDAIERQMSHQERNAVRAAYIHKAEHIVERKLIMQWWGDYLDAVSREFVVPYEFEIG

Flanking regions ( +/- flanking 50bp)

TAAAAGTCACGATGCGATAAACCAATTCGACAAAGGAGTGACCCGGACTTATGGCATTAAGTGACATGGCAGCAAGGAACGCAAAACCTGGTAAAAAGATGTACAAACTGGCCGACGAGTACGGCCTGTATCTTCAGGTAAATCCGATCGGTACAAAGCGCTGGTATTTTAAGTTTGCATACAACGGCAAAGAGAGCCGGATAGCATTCGGCGCATATCCGCTGGTTTCACTGTCACGCGCCCGTGATAAACGCGATGAAGCCCGTCTGATGATACTGGATGGCATTCACCCGAAGCAGAAGCGTATCGCGGAGAAGGAAGCCGAAGAGGACGCGCTGAATACCTTTGAGAAAATGGCGCGGGAATGGTCACAGCAGATGCTCAGACGGCGGCGCTGGTCAGAGACGCACGCCAACCGTATCTGGCGCGATATGGAAAAGCATATTCTCCCGGCGATAGGTCAGCGGCATGTTGCAGAACTGAAAACCAAAGATTTACTGATACCGCTGCGGGTCGTGGAGGCGAATGATCGCCTGGAGCTGGCCTCACGGCTGAAGCAGCGGATCACGGATATCATGGGATATGCAGTTCAATGCGGCGTGATTGATCGCAATCCGGCGAAAGACATGGCCGGAGCGTTGATGCCGCCGCGGGTTACTCACCGCCCGGCGTTACGGCTGGAACGGTTGCCGGAGTTTCTGACGAAGCTGGATTATTACTACGGCCGCCGGCTAACCAAACTGGCGATACAGTTTACGCTGCTGACGTTTTCGCGCTCCAGTGAAATCCGGCTTGCCCGCTGGTCTGAATTCGACATAGAACGCGCCATCTGGATAATTCCGGCGGAGCGCACGCCGATCCCCGGTGTGAAATTCTCTTATCGTGGTGCGAAAATGCAGTCAGAACATATTGTGCCACTGTCGCGCCAGACTCTGGCCGTTCTGGCAGAGATCAGGACAATCAGCGGAGAGGGCGAGCTACTCTTCCCGGGCGACCACAGCCTGATAAAACCGATGAGTGAGAACACGGTGAACAATGCCCTGCGGACGATGGGATATGACACTGCTAAGGAGCTGTGCGGTCATGGTTTTCGCACCATGGCGTGCAGCGCACTGATTGAATCAGGAAAATGGTCACGGGATGCGATAGAGCGGCAGATGAGCCACCAGGAGCGCAATGCCGTCCGCGCCGCCTATATTCACAAAGCCGAACACATTGTGGAACGAAAACTGATAATGCAATGGTGGGGTGATTACCTGGATGCGGTCAGCAGGGAATTTGTGGTGCCGTATGAGTTTGAGATCGGATAATATTTAATACACTACCGGCTGTTTTTAGATGGCCGGTACTGTATATCATC