Orthogroup:group_50



Homologs in group_50

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14 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08880 FBDBKF_08880 Morganella morganii S1 fimB Integrase/recombinase, includes phage integrase
FBDBKF_14415 FBDBKF_14415 Morganella morganii S1 - Integrase arm-type DNA-binding domain-containing protein
FBDBKF_19690 FBDBKF_19690 Morganella morganii S1 - Integrase
EHELCC_07865 EHELCC_07865 Morganella morganii S2 - Integrase arm-type DNA-binding domain-containing protein
EHELCC_12645 EHELCC_12645 Morganella morganii S2 fimB Integrase/recombinase, includes phage integrase
NLDBIP_08190 NLDBIP_08190 Morganella morganii S4 - Integrase arm-type DNA-binding domain-containing protein
NLDBIP_12985 NLDBIP_12985 Morganella morganii S4 fimB Integrase/recombinase, includes phage integrase
LHKJJB_06075 LHKJJB_06075 Morganella morganii S3 - Integrase arm-type DNA-binding domain-containing protein
LHKJJB_13570 LHKJJB_13570 Morganella morganii S3 fimB Integrase/recombinase, includes phage integrase
HKOGLL_04840 HKOGLL_04840 Morganella morganii S5 - Integrase arm-type DNA-binding domain-containing protein
HKOGLL_11460 HKOGLL_11460 Morganella morganii S5 fimB Integrase/recombinase, includes phage integrase
F4V73_RS02510 F4V73_RS02510 Morganella psychrotolerans - tyrosine-type recombinase/integrase
F4V73_RS10095 F4V73_RS10095 Morganella psychrotolerans - tyrosine-type recombinase/integrase
PMI_RS17290 PMI_RS17290 Proteus mirabilis HI4320 - integrase arm-type DNA-binding domain-containing protein

Distribution of group_50 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_50 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_50

Orthogroup content: 14 members

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This page summarizes the annotation of all members of the orthologous group group_50.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 fimB 5
2 - 9

Product

# Product Occurence
1 Integrase/recombinase, includes phage integrase 5
2 Integrase arm-type DNA-binding domain-containing protein 5
3 Integrase 1
4 tyrosine-type recombinase/integrase 2
5 integrase arm-type DNA-binding domain-containing protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0582 14 LX Replication, recombination and repair (L)
Mobilome: prophages, transposons (X)
Integrase/recombinase, includes phage integrase

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00589 14 Phage integrase family
PF13356 14 Arm DNA-binding domain
PF22022 14 Phage integrase central domain

Annotations of the 11 SwissProt hits

Annotation Number of occurrences
Integrase 3
Prophage integrase IntA 1
Prophage integrase IntS 1
Prophage integrase IntZ 1
Putative protein IntB 1
Tyrosine recombinase THA_404 1
Tyrosine recombinase XerA 1
Tyrosine recombinase XerC 2

Protein length

Min length 393
Max length 425
Mean length (sd) 417.4 (7.4)
Median length 419.5

Protein length distribution