PF22022


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF22022, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 20 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF22022
Description Phage integrase central domain

Occurence in the database

PF22022 is associated with 20 different proteins (see tab "Protein list" and "Profile")
The 20 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_50 FBDBKF_08880 157601 158854 1 fimB Integrase/recombinase, includes phage integrase Morganella morganii S1
1 group_1774 FBDBKF_12945 88252 89364 1 hypothetical protein Morganella morganii S1
2 group_50 FBDBKF_14415 83204 84466 1 Integrase arm-type DNA-binding domain-containing protein Morganella morganii S1
3 group_2987 FBDBKF_17095 1760 2962 -1 Integrase Morganella morganii S1
4 group_50 FBDBKF_19690 1959 3236 -1 Integrase Morganella morganii S1
5 group_2987 EHELCC_01795 352539 353741 1 Integrase Morganella morganii S2
6 group_50 EHELCC_07865 32519 33781 -1 Integrase arm-type DNA-binding domain-containing protein Morganella morganii S2
7 group_50 EHELCC_12645 4871 6124 -1 fimB Integrase/recombinase, includes phage integrase Morganella morganii S2
8 group_2987 NLDBIP_01665 326395 327597 -1 Integrase Morganella morganii S4
9 group_50 NLDBIP_08190 32519 33781 -1 Integrase arm-type DNA-binding domain-containing protein Morganella morganii S4
10 group_50 NLDBIP_12985 4871 6124 -1 fimB Integrase/recombinase, includes phage integrase Morganella morganii S4
11 group_2987 LHKJJB_00370 65088 66290 1 Integrase Morganella morganii S3
12 group_50 LHKJJB_06075 223378 224640 1 Integrase arm-type DNA-binding domain-containing protein Morganella morganii S3
13 group_50 LHKJJB_13570 156319 157572 1 fimB Integrase/recombinase, includes phage integrase Morganella morganii S3
14 group_2987 HKOGLL_00410 70599 71801 1 Integrase Morganella morganii S5
15 group_50 HKOGLL_04840 17110 18372 -1 Integrase arm-type DNA-binding domain-containing protein Morganella morganii S5
16 group_50 HKOGLL_11460 4871 6124 -1 fimB Integrase/recombinase, includes phage integrase Morganella morganii S5
17 group_50 F4V73_RS02510 530175 531356 -1 tyrosine-type recombinase/integrase Morganella psychrotolerans
18 group_50 F4V73_RS10095 127299 128558 1 tyrosine-type recombinase/integrase Morganella psychrotolerans
19 group_50 PMI_RS17290 3798109 3799374 1 integrase arm-type DNA-binding domain-containing protein Proteus mirabilis HI4320