PF21088


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF21088, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 28 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF21088
Description Mechanosensitive ion channel, transmembrane helices 2/3

Occurence in the database

PF21088 is associated with 28 different proteins (see tab "Protein list" and "Profile")
The 28 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_835 FBDBKF_04210 26406 27266 -1 mscS Small-conductance mechanosensitive channel Morganella morganii S1
1 group_1356 FBDBKF_08405 58282 61644 -1 mscM miniconductance mechanosensitive channel MscM Morganella morganii S1
2 group_1454 FBDBKF_09255 82555 83595 -1 mscS Small-conductance mechanosensitive channel Morganella morganii S1
3 group_2127 FBDBKF_15985 49143 52553 1 mscK mechanosensitive channel MscK Morganella morganii S1
4 group_835 EHELCC_05500 85863 86723 -1 mscS Small-conductance mechanosensitive channel Morganella morganii S2
5 group_1454 EHELCC_10155 62509 63549 1 mscS Small-conductance mechanosensitive channel Morganella morganii S2
6 group_1356 EHELCC_13120 102081 105443 1 mscM miniconductance mechanosensitive channel MscM Morganella morganii S2
7 group_2127 EHELCC_18590 6577 9987 1 mscK mechanosensitive channel MscK Morganella morganii S2
8 group_835 NLDBIP_05820 126928 127788 -1 mscS Small-conductance mechanosensitive channel Morganella morganii S4
9 group_1454 NLDBIP_10500 40780 41820 1 mscS Small-conductance mechanosensitive channel Morganella morganii S4
10 group_1356 NLDBIP_13460 102081 105443 1 mscM miniconductance mechanosensitive channel MscM Morganella morganii S4
11 group_2127 NLDBIP_17420 36582 39992 1 mscK mechanosensitive channel MscK Morganella morganii S4
12 group_835 LHKJJB_02700 104452 105312 -1 mscS Small-conductance mechanosensitive channel Morganella morganii S3
13 group_1454 LHKJJB_10855 149708 150748 -1 mscS Small-conductance mechanosensitive channel Morganella morganii S3
14 group_1356 LHKJJB_13095 57000 60362 -1 mscM miniconductance mechanosensitive channel MscM Morganella morganii S3
15 group_2127 LHKJJB_17240 16196 19606 -1 mscK mechanosensitive channel MscK Morganella morganii S3
16 group_835 HKOGLL_06175 26316 27176 -1 mscS Small-conductance mechanosensitive channel Morganella morganii S5
17 group_1356 HKOGLL_11935 102081 105443 1 mscM miniconductance mechanosensitive channel MscM Morganella morganii S5
18 group_1454 HKOGLL_13915 83009 84049 -1 mscS Small-conductance mechanosensitive channel Morganella morganii S5
19 group_2127 HKOGLL_17155 36582 39992 1 mscK mechanosensitive channel MscK Morganella morganii S5
20 group_835 F4V73_RS08655 1786207 1787067 -1 mscS small-conductance mechanosensitive channel MscS Morganella psychrotolerans
21 group_1356 F4V73_RS09615 24251 27610 -1 mscM miniconductance mechanosensitive channel MscM Morganella psychrotolerans
22 group_1454 F4V73_RS10715 272515 273561 1 mechanosensitive ion channel family protein Morganella psychrotolerans
23 group_2127 F4V73_RS16325 77741 81151 -1 mscK mechanosensitive channel MscK Morganella psychrotolerans
24 group_2127 PMI_RS00655 167517 170945 1 mscK mechanosensitive channel MscK Proteus mirabilis HI4320
25 group_835 PMI_RS10050 2179738 2180598 -1 mscS small-conductance mechanosensitive channel MscS Proteus mirabilis HI4320
26 group_1454 PMI_RS10665 2344705 2345730 1 mechanosensitive ion channel family protein Proteus mirabilis HI4320
27 group_1356 PMI_RS16680 3678166 3681501 -1 mscM miniconductance mechanosensitive channel MscM Proteus mirabilis HI4320