PF21088
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF21088, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 28 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link |
PF21088 |
Description |
Mechanosensitive ion channel, transmembrane helices 2/3 |
Occurence in the database
PF21088 is associated with 28 different proteins (see tab "Protein list" and "Profile") |
The 28 proteins are classified into 4 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_835 |
FBDBKF_04210 |
26406 |
27266 |
-1 |
mscS |
Small-conductance mechanosensitive channel |
Morganella morganii S1 |
1 |
group_1356 |
FBDBKF_08405 |
58282 |
61644 |
-1 |
mscM |
miniconductance mechanosensitive channel MscM |
Morganella morganii S1 |
2 |
group_1454 |
FBDBKF_09255 |
82555 |
83595 |
-1 |
mscS |
Small-conductance mechanosensitive channel |
Morganella morganii S1 |
3 |
group_2127 |
FBDBKF_15985 |
49143 |
52553 |
1 |
mscK |
mechanosensitive channel MscK |
Morganella morganii S1 |
4 |
group_835 |
EHELCC_05500 |
85863 |
86723 |
-1 |
mscS |
Small-conductance mechanosensitive channel |
Morganella morganii S2 |
5 |
group_1454 |
EHELCC_10155 |
62509 |
63549 |
1 |
mscS |
Small-conductance mechanosensitive channel |
Morganella morganii S2 |
6 |
group_1356 |
EHELCC_13120 |
102081 |
105443 |
1 |
mscM |
miniconductance mechanosensitive channel MscM |
Morganella morganii S2 |
7 |
group_2127 |
EHELCC_18590 |
6577 |
9987 |
1 |
mscK |
mechanosensitive channel MscK |
Morganella morganii S2 |
8 |
group_835 |
NLDBIP_05820 |
126928 |
127788 |
-1 |
mscS |
Small-conductance mechanosensitive channel |
Morganella morganii S4 |
9 |
group_1454 |
NLDBIP_10500 |
40780 |
41820 |
1 |
mscS |
Small-conductance mechanosensitive channel |
Morganella morganii S4 |
10 |
group_1356 |
NLDBIP_13460 |
102081 |
105443 |
1 |
mscM |
miniconductance mechanosensitive channel MscM |
Morganella morganii S4 |
11 |
group_2127 |
NLDBIP_17420 |
36582 |
39992 |
1 |
mscK |
mechanosensitive channel MscK |
Morganella morganii S4 |
12 |
group_835 |
LHKJJB_02700 |
104452 |
105312 |
-1 |
mscS |
Small-conductance mechanosensitive channel |
Morganella morganii S3 |
13 |
group_1454 |
LHKJJB_10855 |
149708 |
150748 |
-1 |
mscS |
Small-conductance mechanosensitive channel |
Morganella morganii S3 |
14 |
group_1356 |
LHKJJB_13095 |
57000 |
60362 |
-1 |
mscM |
miniconductance mechanosensitive channel MscM |
Morganella morganii S3 |
15 |
group_2127 |
LHKJJB_17240 |
16196 |
19606 |
-1 |
mscK |
mechanosensitive channel MscK |
Morganella morganii S3 |
16 |
group_835 |
HKOGLL_06175 |
26316 |
27176 |
-1 |
mscS |
Small-conductance mechanosensitive channel |
Morganella morganii S5 |
17 |
group_1356 |
HKOGLL_11935 |
102081 |
105443 |
1 |
mscM |
miniconductance mechanosensitive channel MscM |
Morganella morganii S5 |
18 |
group_1454 |
HKOGLL_13915 |
83009 |
84049 |
-1 |
mscS |
Small-conductance mechanosensitive channel |
Morganella morganii S5 |
19 |
group_2127 |
HKOGLL_17155 |
36582 |
39992 |
1 |
mscK |
mechanosensitive channel MscK |
Morganella morganii S5 |
20 |
group_835 |
F4V73_RS08655 |
1786207 |
1787067 |
-1 |
mscS |
small-conductance mechanosensitive channel MscS |
Morganella psychrotolerans |
21 |
group_1356 |
F4V73_RS09615 |
24251 |
27610 |
-1 |
mscM |
miniconductance mechanosensitive channel MscM |
Morganella psychrotolerans |
22 |
group_1454 |
F4V73_RS10715 |
272515 |
273561 |
1 |
|
mechanosensitive ion channel family protein |
Morganella psychrotolerans |
23 |
group_2127 |
F4V73_RS16325 |
77741 |
81151 |
-1 |
mscK |
mechanosensitive channel MscK |
Morganella psychrotolerans |
24 |
group_2127 |
PMI_RS00655 |
167517 |
170945 |
1 |
mscK |
mechanosensitive channel MscK |
Proteus mirabilis HI4320 |
25 |
group_835 |
PMI_RS10050 |
2179738 |
2180598 |
-1 |
mscS |
small-conductance mechanosensitive channel MscS |
Proteus mirabilis HI4320 |
26 |
group_1454 |
PMI_RS10665 |
2344705 |
2345730 |
1 |
|
mechanosensitive ion channel family protein |
Proteus mirabilis HI4320 |
27 |
group_1356 |
PMI_RS16680 |
3678166 |
3681501 |
-1 |
mscM |
miniconductance mechanosensitive channel MscM |
Proteus mirabilis HI4320 |