Homologs in group_1356

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08405 FBDBKF_08405 100.0 Morganella morganii S1 mscM miniconductance mechanosensitive channel MscM
EHELCC_13120 EHELCC_13120 100.0 Morganella morganii S2 mscM miniconductance mechanosensitive channel MscM
NLDBIP_13460 NLDBIP_13460 100.0 Morganella morganii S4 mscM miniconductance mechanosensitive channel MscM
LHKJJB_13095 LHKJJB_13095 100.0 Morganella morganii S3 mscM miniconductance mechanosensitive channel MscM
F4V73_RS09615 F4V73_RS09615 92.5 Morganella psychrotolerans mscM miniconductance mechanosensitive channel MscM
PMI_RS16680 PMI_RS16680 67.5 Proteus mirabilis HI4320 mscM miniconductance mechanosensitive channel MscM

Distribution of the homologs in the orthogroup group_1356

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1356

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P39285 0.0 1262 57 8 1125 1 mscM Miniconductance mechanosensitive channel MscM Escherichia coli (strain K12)
Q57362 7.8e-93 325 28 20 917 1 HI_0195.1 Uncharacterized MscS family protein HI_0195.1 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P77338 8.41e-93 325 27 19 1008 1 mscK Mechanosensitive channel MscK Escherichia coli (strain K12)
O52401 1.48e-12 73 23 4 247 3 mscS Small-conductance mechanosensitive channel Edwardsiella ictaluri (strain 93-146)
O28726 2.08e-12 72 24 6 272 3 AF_1546 Uncharacterized MscS family protein AF_1546 Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
O66994 2.45e-10 67 29 2 127 3 aq_812 Uncharacterized MscS family protein aq_812 Aquifex aeolicus (strain VF5)
Q89AB5 3.4e-10 65 21 2 208 3 bbp_402 Uncharacterized MscS family protein bbp_402 Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q55717 4.25e-10 65 24 4 245 3 slr0639 Uncharacterized MscS family protein slr0639 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P0C0S3 6.14e-10 65 23 4 243 3 mscS Small-conductance mechanosensitive channel Shigella flexneri
P0C0S1 6.14e-10 65 23 4 243 1 mscS Small-conductance mechanosensitive channel Escherichia coli (strain K12)
P0C0S2 6.14e-10 65 23 4 243 3 mscS Small-conductance mechanosensitive channel Escherichia coli O157:H7
Q8K9B1 8.89e-10 64 21 6 256 3 BUsg_437 Uncharacterized MscS family protein BUsg_437 Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57527 3.6e-09 63 21 6 256 3 BU452 Uncharacterized MscS family protein BU452 Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
O34897 1.49e-07 57 22 5 210 2 ykuT Uncharacterized MscS family protein YkuT Bacillus subtilis (strain 168)
Q8R6L9 6.78e-07 55 22 5 212 1 mscS Small-conductance mechanosensitive channel Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
P0AEB5 1.84e-05 52 31 1 83 1 ynaI Low conductance mechanosensitive channel YnaI Escherichia coli (strain K12)
P0AEB6 1.84e-05 52 31 1 83 3 ynaI Low conductance mechanosensitive channel YnaI Escherichia coli O157:H7
Q8VZL4 2.81e-05 52 28 0 76 1 MSL1 Mechanosensitive ion channel protein 1, mitochondrial Arabidopsis thaliana
Q58543 5.57e-05 50 29 2 103 1 MJ1143 Large-conductance mechanosensitive channel MscMJLR Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
O07594 9.54e-05 49 34 2 84 3 yhdY Uncharacterized MscS family protein YhdY Bacillus subtilis (strain 168)
O35043 0.000154 48 22 3 139 2 yfkC Uncharacterized MscS family protein YfkC Bacillus subtilis (strain 168)
Q57634 0.000472 47 24 5 173 1 MJ0170 Small-conductance mechanosensitive channel MscMJ Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_11935
Feature type CDS
Gene mscM
Product miniconductance mechanosensitive channel MscM
Location 102081 - 105443 (strand: 1)
Length 3363 (nucleotides) / 1120 (amino acids)

Contig

Accession ZDB_689
Length 162442 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1356
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00924 Mechanosensitive ion channel, beta-domain
PF12794 Mechanosensitive ion channel inner membrane domain 1
PF12795 Mechanosensitive ion channel porin domain
PF21082 Mechanosensitive ion channel MscS, C-terminal
PF21088 Mechanosensitive ion channel, transmembrane helices 2/3

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3264 Cell wall/membrane/envelope biogenesis (M) M Small-conductance mechanosensitive channel MscK

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K22051 miniconductance mechanosensitive channel - -

Protein Sequence

MRLIISFLLAVFLFSPLTAVYAASDINEPQIRQELKRIESSKDPKDIEMAQALQATLNWLTDSKAADERAQSYQDTIDNFPKLVRALRQQLLEESDSPAKILTTRPISDLEQQAIQLSGQLLEQGRLLQQEQDKNREISDSLTLLPQQQSEARRLLNEATSRQQGLATPLTPLAEAQATLAAAEVQARKATVNELELAQLSANNRQELTRIRLELLRKRYQRLDLELQQLRSVLNGKRQQKAELALERTELLAEQAGDLPPYLKEQIDINRELSQVLNDQAAHMSDIGEMQRQAATDIQKARQVLGTIQEQAQWLNGSTALGEALRAQLSRLPDMPKPQQLDKEITDLRVERLKYENMLDALSGNNNEPDTSQTASLPPDQASLYQQLIQNRKELLGSLLSGYDTEILELTKLKVTTSQLSDVLIEVRDDTHRYLFWVADATPVYLNYPIEVLTSLTKLLSLDTLAQLGGAFKTMFSWQNKEISLYIISTLLLAIFGLNYRRHYQAFLDRTSQRIGKVTLDRFSITLRTLFWSVLVSLPLPVLWSAIGYGLQNAWQYPMAKAIGDGVSATTPVLWLFMFCATFARPNGLFIAQFRWPEARVKRAMRFYQLSIFVIVPLMMAMTTFEYFNDREFAPTLGRLCFLLLCAALFIITSSLRRAGVPLYLDRHGSGDNAVSKGMWWLLLLAPVVAAIAALLGYLATSQALLGRLETSVAIWFMLLVVYNIITRWMLIQRRRIAFERAKQRRAEILAQRAKSDDDSSVNSNANSAEGVIDIEEQVIDLDTISAQSVGLVRSILTMIALVSCILLWSELHTAFSFLENIRLWDVSSSINGVDTLQPITLGSVFVAILVIIITTQLVRNLPALLELALLQHLDLTPGTGYAITTLTKYSITLVGGIVGFSLIGIEWSKMQWFVTAMGVGLGFGLQEIFANIVSGLMILFEKPIRIGDTVTIRDLTGSITRINTRATTLTDWDRKEIIVPNKAFITEQFINWSLSDTVTRIVLTIPVPAEANPEQVTILLLMAAQDSAMILDTPNPEAYLVDLQQGIQIFELRAYAAEMGHRLPARHEIHQNILRSFAENNIILPFPPFEARVDMVGNILRSGTKNLSGRNPMRKSGGL

Flanking regions ( +/- flanking 50bp)

CATGCCCGTCACAACCGGACGCCGCTGCCACTAACTGAGGACTCTCCCCTGTGCGCCTGATTATCTCATTTTTACTGGCGGTTTTTCTTTTCTCCCCGCTGACAGCGGTATATGCGGCATCGGATATTAACGAGCCGCAGATCCGCCAGGAACTGAAGCGGATTGAGAGCAGTAAAGATCCGAAAGATATTGAGATGGCTCAGGCGTTACAGGCGACCCTGAACTGGCTTACAGACAGCAAAGCCGCGGATGAACGCGCACAAAGCTATCAGGACACCATCGATAACTTCCCGAAGCTGGTCAGGGCGTTACGTCAGCAACTGCTGGAAGAGAGTGATTCCCCGGCCAAAATTCTGACCACCCGCCCTATCAGCGACCTTGAGCAGCAGGCTATCCAGCTCAGCGGACAGTTACTGGAGCAGGGACGGCTGTTACAGCAGGAGCAGGACAAAAACCGCGAAATCAGCGATTCTCTGACCCTCCTGCCCCAGCAGCAGTCCGAAGCCCGCCGTCTCCTGAATGAAGCCACCTCCCGCCAGCAGGGACTCGCAACCCCGCTGACCCCGCTTGCCGAGGCTCAGGCCACGCTGGCCGCCGCAGAAGTGCAGGCGCGCAAAGCAACGGTCAATGAGCTGGAACTGGCTCAGCTTTCTGCCAACAACCGCCAGGAACTGACCCGCATCCGCCTTGAACTGCTGCGTAAACGCTATCAGCGGCTGGATCTCGAACTTCAGCAATTGCGCAGTGTGCTCAACGGAAAACGTCAGCAGAAAGCGGAACTGGCGCTGGAACGCACCGAACTGCTGGCCGAACAGGCCGGTGATTTACCGCCGTACCTGAAAGAACAGATTGATATCAACCGCGAACTGTCGCAGGTGCTGAATGATCAGGCTGCGCACATGAGTGATATCGGGGAGATGCAGCGCCAGGCGGCAACTGATATCCAGAAAGCGCGTCAGGTACTCGGCACCATTCAGGAGCAGGCACAGTGGCTGAACGGCTCAACCGCACTGGGGGAAGCCCTGCGGGCACAGCTCAGCCGCCTGCCGGACATGCCGAAACCGCAGCAGCTGGATAAAGAGATTACCGACCTGCGTGTTGAGCGTCTGAAATATGAAAATATGCTCGATGCCCTGTCCGGTAATAATAATGAACCGGATACGTCACAAACAGCCTCCCTCCCGCCGGATCAGGCTTCCCTCTATCAGCAGCTGATTCAGAACCGCAAGGAGCTGCTCGGCTCTCTGCTCTCCGGTTACGATACTGAAATTCTGGAGCTGACCAAGCTCAAAGTGACCACCAGTCAGCTTAGTGATGTGCTGATTGAAGTCCGCGACGACACCCACCGCTATCTGTTCTGGGTGGCGGATGCCACACCGGTTTACCTCAATTACCCGATTGAGGTACTGACCAGCCTGACCAAACTGCTGTCACTGGATACCCTGGCGCAGCTCGGCGGCGCATTTAAAACCATGTTCTCGTGGCAGAACAAAGAGATTTCACTCTATATTATCAGCACCCTGCTGCTGGCGATTTTCGGCCTGAACTACCGCCGCCACTATCAGGCATTTCTGGACAGAACCAGTCAGCGTATCGGTAAAGTAACACTGGATCGCTTTTCCATCACACTGCGCACCCTGTTCTGGTCTGTGCTTGTCTCTCTGCCGCTGCCGGTACTGTGGTCCGCTATCGGCTACGGGTTACAGAATGCCTGGCAGTACCCGATGGCAAAAGCGATCGGTGACGGTGTCAGCGCCACCACACCGGTGCTGTGGCTGTTTATGTTCTGCGCAACCTTTGCCCGGCCTAACGGGCTGTTTATCGCACAGTTCCGCTGGCCGGAAGCCCGCGTTAAACGGGCAATGCGTTTCTATCAGCTTTCCATTTTTGTCATTGTGCCGCTGATGATGGCAATGACCACCTTTGAATACTTCAATGACCGGGAGTTTGCCCCGACACTCGGCCGTCTCTGCTTCCTGCTGCTGTGTGCCGCGCTATTTATCATTACCAGCAGCCTGCGCCGTGCGGGAGTTCCGCTCTATCTTGACCGCCACGGCAGCGGCGACAATGCCGTCAGCAAAGGAATGTGGTGGCTGCTCCTGCTGGCACCGGTAGTGGCGGCGATTGCCGCTCTGCTCGGCTATCTCGCGACTTCACAGGCACTGCTCGGCCGCCTGGAAACCTCGGTCGCCATCTGGTTTATGCTGCTGGTGGTCTACAACATTATCACCCGCTGGATGCTGATCCAGCGCCGCCGTATCGCCTTTGAACGCGCCAAACAGCGCCGCGCTGAAATCCTGGCACAACGGGCAAAAAGTGATGATGACAGCAGCGTCAACAGCAATGCCAACAGTGCGGAAGGTGTGATTGATATTGAAGAGCAGGTCATTGACCTCGATACCATCAGTGCGCAGTCAGTCGGGCTGGTCCGTTCAATTCTGACTATGATTGCCCTGGTATCCTGTATTCTGCTCTGGTCTGAACTGCACACCGCCTTCTCCTTCCTGGAAAATATCCGGCTGTGGGATGTCAGCAGCAGTATCAACGGTGTGGATACCCTCCAGCCGATTACGCTCGGCTCTGTCTTTGTCGCCATTCTGGTGATTATCATCACCACGCAGCTGGTGCGGAACCTTCCCGCATTGCTGGAACTGGCGCTGTTACAGCATCTCGATCTGACTCCGGGTACCGGTTACGCGATTACCACGCTGACCAAATACAGTATTACCCTGGTCGGCGGGATTGTCGGCTTCTCGCTGATCGGCATTGAATGGTCGAAAATGCAGTGGTTTGTCACTGCAATGGGTGTCGGGCTGGGCTTTGGTTTACAGGAGATTTTCGCCAACATTGTTTCCGGCCTGATGATCCTGTTCGAAAAACCGATCCGTATCGGCGATACCGTCACCATCCGTGACCTGACCGGCAGCATCACGCGTATCAACACCCGCGCAACCACGCTGACAGACTGGGACCGCAAAGAGATCATCGTCCCGAACAAAGCCTTTATTACCGAGCAGTTTATCAACTGGTCGCTCTCAGATACCGTCACCCGTATCGTCCTGACCATCCCGGTCCCGGCGGAAGCCAATCCGGAGCAGGTCACTATTCTGCTGCTGATGGCGGCACAGGACTCGGCAATGATTCTGGACACACCAAATCCGGAAGCTTATCTGGTTGATTTACAACAGGGTATTCAGATTTTCGAACTGCGCGCCTACGCCGCTGAAATGGGACACCGCCTGCCGGCGCGTCATGAGATCCATCAGAATATCCTGCGCAGCTTCGCGGAAAACAATATCATCCTGCCGTTCCCGCCGTTTGAGGCGCGGGTGGATATGGTGGGAAATATTCTGCGCAGCGGCACAAAGAACCTGTCGGGCCGTAACCCGATGCGGAAATCCGGCGGGTTGTGATATCACAGATAGTGATCCACACCGCCGTGATGTGAACAGGTGCCGCGTCC