PF13545
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13545, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 20 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link |
PF13545 |
Description |
Crp-like helix-turn-helix domain |
Occurence in the database
PF13545 is associated with 20 different proteins (see tab "Protein list" and "Profile") |
The 20 proteins are classified into 3 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_2528 |
FBDBKF_02305 |
148048 |
148764 |
1 |
crp |
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases |
Morganella morganii S1 |
1 |
group_670 |
FBDBKF_02400 |
174390 |
175148 |
-1 |
fnr |
Fumarate and nitrate reduction regulatory protein |
Morganella morganii S1 |
2 |
group_1698 |
FBDBKF_11845 |
19552 |
20184 |
1 |
crp |
cAMP-activated global transcriptional regulator CRP |
Morganella morganii S1 |
3 |
group_2528 |
EHELCC_02775 |
535868 |
536584 |
1 |
crp |
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases |
Morganella morganii S2 |
4 |
group_670 |
EHELCC_02870 |
562210 |
562968 |
-1 |
fnr |
Fumarate and nitrate reduction regulatory protein |
Morganella morganii S2 |
5 |
group_1698 |
EHELCC_14460 |
114521 |
115153 |
-1 |
crp |
cAMP-activated global transcriptional regulator CRP |
Morganella morganii S2 |
6 |
group_670 |
NLDBIP_00590 |
117168 |
117926 |
1 |
fnr |
Fumarate and nitrate reduction regulatory protein |
Morganella morganii S4 |
7 |
group_2528 |
NLDBIP_00685 |
143552 |
144268 |
-1 |
crp |
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases |
Morganella morganii S4 |
8 |
group_1698 |
NLDBIP_15555 |
118458 |
119090 |
-1 |
crp |
cAMP-activated global transcriptional regulator CRP |
Morganella morganii S4 |
9 |
group_2528 |
LHKJJB_01350 |
248417 |
249133 |
1 |
crp |
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases |
Morganella morganii S3 |
10 |
group_670 |
LHKJJB_01445 |
274759 |
275517 |
-1 |
fnr |
Fumarate and nitrate reduction regulatory protein |
Morganella morganii S3 |
11 |
group_1698 |
LHKJJB_15055 |
19552 |
20184 |
1 |
crp |
cAMP-activated global transcriptional regulator CRP |
Morganella morganii S3 |
12 |
group_2528 |
HKOGLL_01390 |
253928 |
254644 |
1 |
crp |
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases |
Morganella morganii S5 |
13 |
group_670 |
HKOGLL_01485 |
280270 |
281028 |
-1 |
fnr |
Fumarate and nitrate reduction regulatory protein |
Morganella morganii S5 |
14 |
group_1698 |
HKOGLL_14175 |
6215 |
6847 |
1 |
crp |
cAMP-activated global transcriptional regulator CRP |
Morganella morganii S5 |
15 |
group_2528 |
F4V73_RS04680 |
986158 |
986874 |
1 |
|
Crp/Fnr family transcriptional regulator |
Morganella psychrotolerans |
16 |
group_670 |
F4V73_RS04780 |
1012897 |
1013655 |
-1 |
fnr |
fumarate/nitrate reduction transcriptional regulator Fnr |
Morganella psychrotolerans |
17 |
group_1698 |
F4V73_RS14805 |
197344 |
197976 |
-1 |
crp |
cAMP-activated global transcriptional regulator CRP |
Morganella psychrotolerans |
18 |
group_670 |
PMI_RS05805 |
1269311 |
1270069 |
-1 |
|
FNR family transcription factor |
Proteus mirabilis HI4320 |
19 |
group_1698 |
PMI_RS13930 |
3093805 |
3094437 |
1 |
crp |
cAMP-activated global transcriptional regulator CRP |
Proteus mirabilis HI4320 |