PF13545


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF13545, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 20 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF13545
Description Crp-like helix-turn-helix domain

Occurence in the database

PF13545 is associated with 20 different proteins (see tab "Protein list" and "Profile")
The 20 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2528 FBDBKF_02305 148048 148764 1 crp cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases Morganella morganii S1
1 group_670 FBDBKF_02400 174390 175148 -1 fnr Fumarate and nitrate reduction regulatory protein Morganella morganii S1
2 group_1698 FBDBKF_11845 19552 20184 1 crp cAMP-activated global transcriptional regulator CRP Morganella morganii S1
3 group_2528 EHELCC_02775 535868 536584 1 crp cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases Morganella morganii S2
4 group_670 EHELCC_02870 562210 562968 -1 fnr Fumarate and nitrate reduction regulatory protein Morganella morganii S2
5 group_1698 EHELCC_14460 114521 115153 -1 crp cAMP-activated global transcriptional regulator CRP Morganella morganii S2
6 group_670 NLDBIP_00590 117168 117926 1 fnr Fumarate and nitrate reduction regulatory protein Morganella morganii S4
7 group_2528 NLDBIP_00685 143552 144268 -1 crp cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases Morganella morganii S4
8 group_1698 NLDBIP_15555 118458 119090 -1 crp cAMP-activated global transcriptional regulator CRP Morganella morganii S4
9 group_2528 LHKJJB_01350 248417 249133 1 crp cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases Morganella morganii S3
10 group_670 LHKJJB_01445 274759 275517 -1 fnr Fumarate and nitrate reduction regulatory protein Morganella morganii S3
11 group_1698 LHKJJB_15055 19552 20184 1 crp cAMP-activated global transcriptional regulator CRP Morganella morganii S3
12 group_2528 HKOGLL_01390 253928 254644 1 crp cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases Morganella morganii S5
13 group_670 HKOGLL_01485 280270 281028 -1 fnr Fumarate and nitrate reduction regulatory protein Morganella morganii S5
14 group_1698 HKOGLL_14175 6215 6847 1 crp cAMP-activated global transcriptional regulator CRP Morganella morganii S5
15 group_2528 F4V73_RS04680 986158 986874 1 Crp/Fnr family transcriptional regulator Morganella psychrotolerans
16 group_670 F4V73_RS04780 1012897 1013655 -1 fnr fumarate/nitrate reduction transcriptional regulator Fnr Morganella psychrotolerans
17 group_1698 F4V73_RS14805 197344 197976 -1 crp cAMP-activated global transcriptional regulator CRP Morganella psychrotolerans
18 group_670 PMI_RS05805 1269311 1270069 -1 FNR family transcription factor Proteus mirabilis HI4320
19 group_1698 PMI_RS13930 3093805 3094437 1 crp cAMP-activated global transcriptional regulator CRP Proteus mirabilis HI4320