Orthogroup:group_742



Homologs in group_742

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_03300 FBDBKF_03300 Morganella morganii S1 yjgA ribosome biogenesis factor YjgA
EHELCC_07235 EHELCC_07235 Morganella morganii S2 yjgA ribosome biogenesis factor YjgA
NLDBIP_07560 NLDBIP_07560 Morganella morganii S4 yjgA ribosome biogenesis factor YjgA
LHKJJB_07095 LHKJJB_07095 Morganella morganii S3 yjgA ribosome biogenesis factor YjgA
HKOGLL_03835 HKOGLL_03835 Morganella morganii S5 yjgA ribosome biogenesis factor YjgA
F4V73_RS11635 F4V73_RS11635 Morganella psychrotolerans yjgA ribosome biogenesis factor YjgA
PMI_RS18115 PMI_RS18115 Proteus mirabilis HI4320 yjgA ribosome biogenesis factor YjgA

Distribution of group_742 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_742 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_742

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_742.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 yjgA 7

Product

# Product Occurence
1 ribosome biogenesis factor YjgA 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3028 7 J Translation, ribosomal structure and biogenesis (J) Ribosomal 50S subunit-associated protein YjgA, DUF615 family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K09889 7 ribosome-associated protein - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF04751 7 Protein of unknown function (DUF615)

Annotations of the 143 SwissProt hits

Annotation Number of occurrences
UPF0307 protein AHA_3937 1
UPF0307 protein APJL_0732 1
UPF0307 protein APL_0730 1
UPF0307 protein APP7_0773 1
UPF0307 protein ASA_0301 1
UPF0307 protein AZOSEA05410 1
UPF0307 protein Asuc_0809 1
UPF0307 protein Avin_12730 1
UPF0307 protein BAV2974 1
UPF0307 protein BB4360 1
UPF0307 protein BP2965 1
UPF0307 protein BPP3887 1
UPF0307 protein BamMC406_0960 1
UPF0307 protein BceJ2315_28530 1
UPF0307 protein Bcen2424_1080 1
UPF0307 protein Bcen_0601 1
UPF0307 protein Bcenmc03_1039 1
UPF0307 protein Bcep18194_A4194 1
UPF0307 protein Bxeno_A3391 1
UPF0307 protein CGSHiEE_06290 1
UPF0307 protein CGSHiGG_09420 1
UPF0307 protein CKO_03595 1
UPF0307 protein CV_3198 1
UPF0307 protein ECA0281 1
UPF0307 protein ESA_00243 1
UPF0307 protein ETA_29350 1
UPF0307 protein Ent638_0421 1
UPF0307 protein HAPS_0332 1
UPF0307 protein HD_1362 1
UPF0307 protein HI_1151 1
UPF0307 protein HSM_0289 1
UPF0307 protein HS_1326 1
UPF0307 protein IL0389 1
UPF0307 protein KPK_5034 1
UPF0307 protein KPN78578_45570 1
UPF0307 protein MS0681 1
UPF0307 protein Mfla_0583 1
UPF0307 protein NE2194 1
UPF0307 protein NMA1049 1
UPF0307 protein NMB0840 1
UPF0307 protein NT01EI_3382 1
UPF0307 protein NTHI1319 1
UPF0307 protein Neut_0689 1
UPF0307 protein Nmul_A2414 1
UPF0307 protein PA4473 1
UPF0307 protein PC1_0266 1
UPF0307 protein PD_0419 1
UPF0307 protein PFL_0904 1
UPF0307 protein PLES_48521 1
UPF0307 protein PM0119 1
UPF0307 protein PMI3641 1
UPF0307 protein PP_0941 1
UPF0307 protein PSEEN1082 1
UPF0307 protein PSPA7_5087 1
UPF0307 protein PSPTO_4464 1
UPF0307 protein PXO_01892 1
UPF0307 protein Pfl01_0846 1
UPF0307 protein Pmen_0864 1
UPF0307 protein PputGB1_0948 1
UPF0307 protein PputW619_4274 1
UPF0307 protein Pput_0981 1
UPF0307 protein RSc0944 1
UPF0307 protein Reut_A0910 1
UPF0307 protein Rmet_2571 1
UPF0307 protein SG0165 1
UPF0307 protein SO_4079 1
UPF0307 protein Shewana3_3632 1
UPF0307 protein Shewmr4_3456 1
UPF0307 protein Shewmr7_0494 1
UPF0307 protein Smal_2897 1
UPF0307 protein Smlt3470 1
UPF0307 protein Spro_4387 1
UPF0307 protein Tbd_2147 1
UPF0307 protein VC_2536 1
UPF0307 protein VFMJ11_0371 1
UPF0307 protein VF_0380 1
UPF0307 protein VIBHAR_03672 1
UPF0307 protein VP2677 1
UPF0307 protein VS_2764 1
UPF0307 protein VV0440 1
UPF0307 protein VV1_0700 1
UPF0307 protein XAC2766 1
UPF0307 protein XCC2605 1
UPF0307 protein XCV2921 1
UPF0307 protein XC_1511 1
UPF0307 protein XF_1130 1
UPF0307 protein XOO3126 1
UPF0307 protein XOO3304 1
UPF0307 protein YE3790 1
UPF0307 protein YPA_3704 1
UPF0307 protein YPDSF_0298 1
UPF0307 protein YPK_0489 1
UPF0307 protein YPN_3481 1
UPF0307 protein YPO3691/y0172/YP_3853 1
UPF0307 protein YPTB3542 1
UPF0307 protein YPTS_3728 1
UPF0307 protein YjgA 43
UPF0307 protein YpAngola_A1170 1
UPF0307 protein YpsIP31758_0425 1
UPF0307 protein plu4061 1
UPF0307 protein xcc-b100_1557 1

Protein length

Min length 182
Max length 186
Mean length (sd) 182.6 (1.5)
Median length 182.0

Protein length distribution