Homologs in group_670

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02400 FBDBKF_02400 94.8 Morganella morganii S1 fnr Fumarate and nitrate reduction regulatory protein
EHELCC_02870 EHELCC_02870 94.8 Morganella morganii S2 fnr Fumarate and nitrate reduction regulatory protein
NLDBIP_00590 NLDBIP_00590 94.8 Morganella morganii S4 fnr Fumarate and nitrate reduction regulatory protein
LHKJJB_01445 LHKJJB_01445 94.8 Morganella morganii S3 fnr Fumarate and nitrate reduction regulatory protein
HKOGLL_01485 HKOGLL_01485 94.8 Morganella morganii S5 fnr Fumarate and nitrate reduction regulatory protein
F4V73_RS04780 F4V73_RS04780 94.4 Morganella psychrotolerans fnr fumarate/nitrate reduction transcriptional regulator Fnr

Distribution of the homologs in the orthogroup group_670

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_670

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9AQ50 1.23e-173 481 93 0 245 3 fnr Fumarate nitrate reduction regulatory protein Klebsiella oxytoca
P0A2T8 8.83e-173 478 94 0 244 3 fnr Fumarate and nitrate reduction regulatory protein Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2T9 8.83e-173 478 94 0 244 3 fnr Fumarate and nitrate reduction regulatory protein Salmonella muenster
P0A9E8 1.25e-172 478 93 0 244 3 fnr Fumarate and nitrate reduction regulatory protein Shigella flexneri
P0A9E5 1.25e-172 478 93 0 244 1 fnr Fumarate and nitrate reduction regulatory protein Escherichia coli (strain K12)
P0A9E6 1.25e-172 478 93 0 244 3 fnr Fumarate and nitrate reduction regulatory protein Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9E7 1.25e-172 478 93 0 244 3 fnr Fumarate and nitrate reduction regulatory protein Escherichia coli O157:H7
Q8Z787 2.95e-172 477 93 0 244 3 fnr Fumarate and nitrate reduction regulatory protein Salmonella typhi
Q9LA24 3.89e-171 474 93 0 244 3 fnr Fumarate and nitrate reduction regulatory protein Shigella dysenteriae
Q8ZE82 9.25e-170 471 93 0 244 3 fnr Fumarate and nitrate reduction regulatory protein Yersinia pestis
P0C6D0 2.19e-156 437 87 0 244 3 fnr Fumarate and nitrate reduction regulatory protein Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A5F890 2.19e-156 437 87 0 244 3 fnr Fumarate and nitrate reduction regulatory protein Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Q9EXQ1 1.87e-149 420 82 0 241 2 fnr Anaerobic regulatory protein Aggregatibacter actinomycetemcomitans
Q9CMY2 5.3e-147 414 82 0 241 3 fnr Anaerobic regulatory protein Pasteurella multocida (strain Pm70)
P45199 1.76e-144 407 82 0 236 3 fnr Anaerobic regulatory protein Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P46148 7.41e-135 382 75 0 245 3 etrA Electron transport regulator A Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1)
P23619 8.09e-131 372 78 0 218 4 hlyX Regulatory protein HlyX Actinobacillus pleuropneumoniae
P47200 2.91e-92 275 54 0 226 4 fnrA Transcriptional activator protein FnrA Stutzerimonas stutzeri
P23926 1.83e-91 272 54 0 226 4 anr Transcriptional activator protein anr Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
O85222 6.93e-90 268 53 0 226 2 anr Transcriptional activator protein Anr Pseudomonas protegens (strain DSM 19095 / LMG 27888 / CFBP 6595 / CHA0)
Q08530 1.07e-61 197 39 0 237 4 btr Transcriptional regulatory protein btr Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
Q46158 5.63e-59 184 96 0 92 2 fnr Anaerobic regulatory protein (Fragment) Capnocytophaga ochracea (strain ATCC 27872 / DSM 7271 / CCUG 9716 / JCM 12966 / NCTC 12371 / SS31 / VPI 2845)
Q46159 4.05e-58 182 95 0 92 2 fnr Anaerobic regulatory protein (Fragment) Capnocytophaga sputigena
Q47948 4.14e-52 167 86 0 92 2 fnr Anaerobic regulatory protein (Fragment) Aggregatibacter aphrophilus
P29286 9.48e-26 103 27 2 225 2 fixK Nitrogen fixation regulation protein FixK Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
P51007 4.79e-23 97 28 6 232 4 fnrL Transcriptional activator protein FnrL Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.)
P24290 6.05e-21 91 25 3 229 4 fnrN Probable transcriptional activator Rhizobium leguminosarum bv. viciae
P13295 8.83e-21 90 28 6 194 4 fixK Nitrogen fixation regulation protein FixK Rhizobium meliloti (strain 1021)
Q01980 6.86e-17 80 25 5 232 1 aadR Transcriptional activatory protein AadR Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
P26488 4.14e-15 75 32 4 162 2 fixK Nitrogen fixation regulation protein FixK Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / LMG 6465 / NBRC 14845 / NCIMB 13405 / ORS 571)
P29284 2.44e-10 62 22 5 218 4 flp Probable transcriptional regulator flp Lacticaseibacillus casei
P33779 9.39e-10 60 24 2 191 4 ntcA Global nitrogen regulator Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P29283 1.39e-09 60 23 2 201 1 ntcA Global nitrogen regulator Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
P0A2T6 1.83e-09 59 24 2 179 1 crp cAMP-activated global transcriptional regulator CRP Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2T7 1.83e-09 59 24 2 179 1 crp cAMP-activated global transcriptional regulator CRP Klebsiella aerogenes
P0ACK1 2.2e-09 59 24 2 179 3 crp cAMP-activated global transcriptional regulator CRP Shigella flexneri
P0ACJ8 2.2e-09 59 24 2 179 1 crp DNA-binding transcriptional dual regulator CRP Escherichia coli (strain K12)
P0ACJ9 2.2e-09 59 24 2 179 3 crp cAMP-activated global transcriptional regulator CRP Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACK0 2.2e-09 59 24 2 179 3 crp cAMP-activated global transcriptional regulator CRP Escherichia coli O157:H7
P0A4U7 3.26e-09 58 24 1 191 4 ntcA Global nitrogen regulator Trichormus variabilis (strain ATCC 29413 / PCC 7937)
P0A4U6 3.26e-09 58 24 1 191 1 ntcA Global nitrogen regulator Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
O05689 4.79e-07 52 21 2 179 3 crp cAMP-activated global transcriptional regulator CRP Pasteurella multocida (strain Pm70)
P55222 5.87e-07 52 22 3 211 1 vfr cAMP-activated global transcriptional regulator Vfr Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P46908 9.53e-07 52 26 5 194 2 fnr Anaerobic regulatory protein Bacillus subtilis (strain 168)
P29281 1.27e-06 51 20 2 179 1 crp cAMP-activated global transcriptional regulator CRP Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P27369 1.38e-05 48 25 4 176 2 cysR Regulatory protein CysR Synechococcus elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)
Q79VI7 2.88e-05 47 21 2 205 1 glxR CRP-like cAMP-activated global transcriptional regulator Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
P9WMH3 9e-05 45 22 1 191 1 crp CRP-like cAMP-activated global transcriptional regulator Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMH2 9e-05 45 22 1 191 1 crp CRP-like cAMP-activated global transcriptional regulator Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P0A643 0.00047 44 26 4 116 3 BQ2027_MB2594 Uncharacterized NTE family protein Mb2594 Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P9WIY7 0.00047 44 26 4 116 1 Rv2565 Uncharacterized NTE family protein Rv2565 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WIY6 0.0005 44 26 4 116 3 MT2641 Uncharacterized NTE family protein MT2641 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q5RDS0 0.000829 44 21 1 108 2 PNPLA6 Patatin-like phospholipase domain-containing protein 6 Pongo abelii
Q3TRM4 0.000843 44 21 2 119 1 Pnpla6 Patatin-like phospholipase domain-containing protein 6 Mus musculus
Q8IY17 0.000884 43 21 2 119 1 PNPLA6 Patatin-like phospholipase domain-containing protein 6 Homo sapiens

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS05805
Feature type CDS
Gene -
Product FNR family transcription factor
Location 1269311 - 1270069 (strand: -1)
Length 759 (nucleotides) / 252 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_670
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00027 Cyclic nucleotide-binding domain
PF13545 Crp-like helix-turn-helix domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0664 Signal transduction mechanisms (T) T cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01420 CRP/FNR family transcriptional regulator, anaerobic regulatory protein - -

Protein Sequence

MIPEKRVVRRIQSGGCAIHCQDCSISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEEGDEQITGFHLAGDLVGFDAIINTEHPSFAQALETSMVCEIPFETLDDLSGKMPNLRQQMMRLMSGEIKGDQEMILLLSKKNAEERLAAFIYNLSRRFAQRGFSPREFRLTMTRGDIGNYLGLTVETISRLLGRFQKSGMLSVKGKYITIEDSEMLSELAGKLPSSTEA

Flanking regions ( +/- flanking 50bp)

TGTGTTAAAATTGACACATATCAATATTTTTATTTGTAATGAGCAAGCTTATGATCCCAGAAAAACGCGTCGTTCGCCGAATCCAATCTGGCGGTTGTGCAATCCATTGTCAAGATTGCAGTATTAGCCAGCTCTGCATCCCGTTTACTTTAAACGAGCATGAGCTTGATCAACTGGATAATATTATCGAGCGTAAAAAACCTATCCAGAAAGGTCAAACCTTGTTTAAAGCCGGTGATGAGCTGAAGTCACTTTATGCCATTCGTTCAGGAACTATTAAAAGTTATACGATCACTGAAGAAGGCGACGAACAGATCACAGGTTTTCATCTTGCAGGTGACTTGGTTGGATTTGATGCCATTATCAACACCGAACACCCAAGCTTTGCACAAGCTCTTGAAACATCAATGGTTTGTGAAATACCATTTGAAACACTAGATGATTTATCAGGCAAAATGCCTAATTTACGTCAACAAATGATGCGTCTAATGAGTGGCGAAATCAAAGGTGACCAAGAGATGATCTTACTGCTATCAAAGAAAAATGCAGAAGAACGTTTAGCCGCCTTTATTTATAACCTCTCTCGCCGCTTTGCGCAGCGCGGTTTTTCACCTCGTGAGTTCCGTTTAACCATGACTCGTGGTGATATTGGTAATTACTTAGGCCTGACAGTAGAAACCATTAGCCGACTATTAGGTCGTTTCCAGAAAAGTGGTATGTTAAGTGTAAAAGGTAAATACATCACTATTGAAGATAGTGAAATGTTAAGTGAACTCGCAGGCAAACTGCCTTCCTCAACAGAAGCTTAATCTTTTACATTACATCACCTATTTTTATAACGGGGCACACAAATTTGTGT