PF08352

Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF08352, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 35 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF08352
Description Oligopeptide/dipeptide transporter, C-terminal region

Occurence in the database

PF08352 is associated with 35 different proteins (see tab "Protein list" and "Profile")
The 35 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_13 FBDBKF_05275 59753 60751 -1 oppF murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF Morganella morganii S1
1 group_960 FBDBKF_05280 60751 61725 -1 oppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Morganella morganii S1
2 group_1009 FBDBKF_05635 134502 135494 1 sapD putrescine export ABC transporter ATP-binding protein SapD Morganella morganii S1
3 group_13 FBDBKF_11970 42468 43466 -1 dppF dipeptide ABC transporter ATP-binding subunit DppF Morganella morganii S1
4 group_343 FBDBKF_11975 43459 44442 -1 dppD dipeptide ABC transporter ATP-binding protein Morganella morganii S1
5 group_1009 EHELCC_11955 46000 46992 -1 sapD putrescine export ABC transporter ATP-binding protein SapD Morganella morganii S2
6 group_960 EHELCC_12310 119769 120743 1 oppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Morganella morganii S2
7 group_13 EHELCC_12315 120743 121741 1 oppF murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF Morganella morganii S2
8 group_343 EHELCC_14330 90263 91246 1 dppD dipeptide ABC transporter ATP-binding protein Morganella morganii S2
9 group_13 EHELCC_14335 91239 92237 1 dppF dipeptide ABC transporter ATP-binding subunit DppF Morganella morganii S2
10 group_1009 NLDBIP_12295 45955 46947 -1 sapD putrescine export ABC transporter ATP-binding protein SapD Morganella morganii S4
11 group_960 NLDBIP_12650 119724 120698 1 oppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Morganella morganii S4
12 group_13 NLDBIP_12655 120698 121696 1 oppF murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF Morganella morganii S4
13 group_343 NLDBIP_15425 94200 95183 1 dppD dipeptide ABC transporter ATP-binding protein Morganella morganii S4
14 group_13 NLDBIP_15430 95176 96174 1 dppF dipeptide ABC transporter ATP-binding subunit DppF Morganella morganii S4
15 group_1009 LHKJJB_12155 46000 46992 -1 sapD putrescine export ABC transporter ATP-binding protein SapD Morganella morganii S3
16 group_960 LHKJJB_12510 119769 120743 1 oppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Morganella morganii S3
17 group_13 LHKJJB_12515 120743 121741 1 oppF murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF Morganella morganii S3
18 group_13 LHKJJB_15180 42468 43466 -1 dppF dipeptide ABC transporter ATP-binding subunit DppF Morganella morganii S3
19 group_343 LHKJJB_15185 43459 44442 -1 dppD dipeptide ABC transporter ATP-binding protein Morganella morganii S3
20 group_1009 HKOGLL_10770 46000 46992 -1 sapD putrescine export ABC transporter ATP-binding protein SapD Morganella morganii S5
21 group_960 HKOGLL_11125 119769 120743 1 oppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Morganella morganii S5
22 group_13 HKOGLL_11130 120743 121741 1 oppF murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF Morganella morganii S5
23 group_13 HKOGLL_14300 29131 30129 -1 dppF dipeptide ABC transporter ATP-binding subunit DppF Morganella morganii S5
24 group_343 HKOGLL_14305 30122 31105 -1 dppD dipeptide ABC transporter ATP-binding protein Morganella morganii S5
25 group_1009 F4V73_RS03670 779465 780457 -1 sapD putrescine export ABC transporter ATP-binding protein SapD Morganella psychrotolerans
26 group_13 F4V73_RS05730 1216437 1217435 -1 oppF murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF Morganella psychrotolerans
27 group_960 F4V73_RS05735 1217432 1218409 -1 ABC transporter ATP-binding protein Morganella psychrotolerans
28 group_343 F4V73_RS14680 171938 172921 1 dppD dipeptide ABC transporter ATP-binding protein Morganella psychrotolerans
29 group_13 F4V73_RS14685 172914 173912 1 dipeptide ABC transporter ATP-binding subunit DppF Morganella psychrotolerans
30 group_1009 PMI_RS06670 1459460 1460461 1 sapD putrescine export ABC transporter ATP-binding protein SapD Proteus mirabilis HI4320
31 group_13 PMI_RS07120 1554709 1555716 -1 oppF murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF Proteus mirabilis HI4320
32 group_960 PMI_RS07125 1555713 1556699 -1 ABC transporter ATP-binding protein Proteus mirabilis HI4320
33 group_13 PMI_RS14045 3118432 3119433 -1 peptide ABC transporter ATP-binding protein Proteus mirabilis HI4320
34 group_343 PMI_RS14050 3119426 3120409 -1 dppD dipeptide ABC transporter ATP-binding protein Proteus mirabilis HI4320