PF08352

Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF08352
Protein list: lists the 35 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.

Description

External link PF08352
Description Oligopeptide/dipeptide transporter, C-terminal region

Occurence in the database

PF08352 is associated with 35 different proteins
The 35 proteins are classified into 5 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_422 FBDBKF_05275 59753 60751 -1 oppF murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF Morganella morganii S1
1 group_1029 FBDBKF_05280 60751 61725 -1 oppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Morganella morganii S1
2 group_1076 FBDBKF_05635 134502 135494 1 sapD putrescine export ABC transporter ATP-binding protein SapD Morganella morganii S1
3 group_423 FBDBKF_11970 42468 43466 -1 dppF dipeptide ABC transporter ATP-binding subunit DppF Morganella morganii S1
4 group_311 FBDBKF_11975 43459 44442 -1 dppD dipeptide ABC transporter ATP-binding protein Morganella morganii S1
5 group_1076 EHELCC_11955 46000 46992 -1 sapD putrescine export ABC transporter ATP-binding protein SapD Morganella morganii S2
6 group_1029 EHELCC_12310 119769 120743 1 oppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Morganella morganii S2
7 group_422 EHELCC_12315 120743 121741 1 oppF murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF Morganella morganii S2
8 group_311 EHELCC_14330 90263 91246 1 dppD dipeptide ABC transporter ATP-binding protein Morganella morganii S2
9 group_423 EHELCC_14335 91239 92237 1 dppF dipeptide ABC transporter ATP-binding subunit DppF Morganella morganii S2
10 group_1076 NLDBIP_12295 45955 46947 -1 sapD putrescine export ABC transporter ATP-binding protein SapD Morganella morganii S4
11 group_1029 NLDBIP_12650 119724 120698 1 oppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Morganella morganii S4
12 group_422 NLDBIP_12655 120698 121696 1 oppF murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF Morganella morganii S4
13 group_311 NLDBIP_15425 94200 95183 1 dppD dipeptide ABC transporter ATP-binding protein Morganella morganii S4
14 group_423 NLDBIP_15430 95176 96174 1 dppF dipeptide ABC transporter ATP-binding subunit DppF Morganella morganii S4
15 group_1076 LHKJJB_12155 46000 46992 -1 sapD putrescine export ABC transporter ATP-binding protein SapD Morganella morganii S3
16 group_1029 LHKJJB_12510 119769 120743 1 oppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Morganella morganii S3
17 group_422 LHKJJB_12515 120743 121741 1 oppF murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF Morganella morganii S3
18 group_423 LHKJJB_15180 42468 43466 -1 dppF dipeptide ABC transporter ATP-binding subunit DppF Morganella morganii S3
19 group_311 LHKJJB_15185 43459 44442 -1 dppD dipeptide ABC transporter ATP-binding protein Morganella morganii S3
20 group_1076 HKOGLL_10770 46000 46992 -1 sapD putrescine export ABC transporter ATP-binding protein SapD Morganella morganii S5
21 group_1029 HKOGLL_11125 119769 120743 1 oppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Morganella morganii S5
22 group_422 HKOGLL_11130 120743 121741 1 oppF murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF Morganella morganii S5
23 group_423 HKOGLL_14300 29131 30129 -1 dppF dipeptide ABC transporter ATP-binding subunit DppF Morganella morganii S5
24 group_311 HKOGLL_14305 30122 31105 -1 dppD dipeptide ABC transporter ATP-binding protein Morganella morganii S5
25 group_1076 F4V73_RS03670 779465 780457 -1 sapD putrescine export ABC transporter ATP-binding protein SapD Morganella psychrotolerans
26 group_422 F4V73_RS05730 1216437 1217435 -1 oppF murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF Morganella psychrotolerans
27 group_1029 F4V73_RS05735 1217432 1218409 -1 ABC transporter ATP-binding protein Morganella psychrotolerans
28 group_311 F4V73_RS14680 171938 172921 1 dppD dipeptide ABC transporter ATP-binding protein Morganella psychrotolerans
29 group_423 F4V73_RS14685 172914 173912 1 dipeptide ABC transporter ATP-binding subunit DppF Morganella psychrotolerans
30 group_1076 PMI_RS06670 1459460 1460461 1 sapD putrescine export ABC transporter ATP-binding protein SapD Proteus mirabilis HI4320
31 group_422 PMI_RS07120 1554709 1555716 -1 oppF murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF Proteus mirabilis HI4320
32 group_1029 PMI_RS07125 1555713 1556699 -1 ABC transporter ATP-binding protein Proteus mirabilis HI4320
33 group_423 PMI_RS14045 3118432 3119433 -1 peptide ABC transporter ATP-binding protein Proteus mirabilis HI4320
34 group_311 PMI_RS14050 3119426 3120409 -1 dppD dipeptide ABC transporter ATP-binding protein Proteus mirabilis HI4320