Orthogroup:group_1029


Homologs in group_1029

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_05800 FBDBKF_05800 Morganella morganii S1 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK
EHELCC_11790 EHELCC_11790 Morganella morganii S2 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK
NLDBIP_12130 NLDBIP_12130 Morganella morganii S4 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK
LHKJJB_11990 LHKJJB_11990 Morganella morganii S3 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK
HKOGLL_10605 HKOGLL_10605 Morganella morganii S5 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK
F4V73_RS03525 F4V73_RS03525 Morganella psychrotolerans - L,D-transpeptidase family protein
PMI_RS06820 PMI_RS06820 Proteus mirabilis HI4320 - L,D-transpeptidase family protein

Distribution of group_1029 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1029 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1029

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1029.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 erfK 5
2 - 2

Product

# Product Occurence
1 Lipoprotein-anchoring transpeptidase ErfK/SrfK 5
2 L,D-transpeptidase family protein 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1376 7 M Cell wall/membrane/envelope biogenesis (M) Lipoprotein-anchoring transpeptidase ErfK/SrfK

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K19236 7 L,D-transpeptidase YcfS Cationic antimicrobial peptide (CAMP) resistance -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01476 6 LysM domain
PF03734 7 L,D-transpeptidase catalytic domain
PF17969 7 L,D-transpeptidase C-terminal domain

Annotations of the 12 SwissProt hits

Annotation Number of occurrences
Probable L,D-transpeptidase ErfK/SrfK 2
Probable L,D-transpeptidase YbiS 3
Probable L,D-transpeptidase YcfS 1
Probable L,D-transpeptidase YnhG 1
Putative L,D-transpeptidase YkuD 3
Putative L,D-transpeptidase YqjB 1
Putative L,D-transpeptidase in ATP synthase subunits region ORF 5 1

Protein length

Min length 305
Max length 361
Mean length (sd) 352.3 (20.9)
Median length 360.0

Protein length distribution