PF04851


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04851, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 34 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF04851
Description Type III restriction enzyme, res subunit

Occurence in the database

PF04851 is associated with 34 different proteins (see tab "Protein list" and "Profile")
The 34 proteins are classified into 6 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_322 FBDBKF_09600 17382 19394 -1 uvrB excinuclease ABC subunit UvrB Morganella morganii S1
1 group_3303 FBDBKF_10270 5642 8074 1 hsdR Type I restriction enzyme EcoEI endonuclease subunit Morganella morganii S1
2 group_3387 FBDBKF_13190 27210 28787 -1 Helicase Morganella morganii S1
3 group_388 FBDBKF_14890 78428 80188 1 sSL2 Superfamily II DNA or RNA helicase Morganella morganii S1
4 group_3458 FBDBKF_15665 67055 69385 -1 DEAD/DEAH box helicase Morganella morganii S1
5 group_3637 EHELCC_04305 188153 191134 1 DEAD/DEAH box helicase family protein Morganella morganii S2
6 group_322 EHELCC_04400 209347 211359 -1 uvrB excinuclease ABC subunit UvrB Morganella morganii S2
7 group_3387 EHELCC_08905 246404 247981 1 Helicase Morganella morganii S2
8 group_3303 EHELCC_14605 5632 8064 1 hsdR Type I restriction enzyme EcoEI endonuclease subunit Morganella morganii S2
9 group_388 EHELCC_15695 108504 110264 1 sSL2 Superfamily II DNA or RNA helicase Morganella morganii S2
10 group_3458 EHELCC_16020 66355 68685 -1 DEAD/DEAH box helicase Morganella morganii S2
11 group_3637 NLDBIP_04305 187949 190930 1 DEAD/DEAH box helicase family protein Morganella morganii S4
12 group_322 NLDBIP_04400 209143 211155 -1 uvrB excinuclease ABC subunit UvrB Morganella morganii S4
13 group_3387 NLDBIP_09230 246404 247981 1 Helicase Morganella morganii S4
14 group_3303 NLDBIP_14435 5632 8064 1 hsdR Type I restriction enzyme EcoEI endonuclease subunit Morganella morganii S4
15 group_388 NLDBIP_16225 108504 110264 1 sSL2 Superfamily II DNA or RNA helicase Morganella morganii S4
16 group_3458 NLDBIP_16345 11978 14308 1 DEAD/DEAH box helicase Morganella morganii S4
17 group_3387 LHKJJB_05035 9178 10755 -1 Helicase Morganella morganii S3
18 group_3637 LHKJJB_10135 188063 191044 1 DEAD/DEAH box helicase family protein Morganella morganii S3
19 group_322 LHKJJB_14230 124223 126235 1 uvrB excinuclease ABC subunit UvrB Morganella morganii S3
20 group_3303 LHKJJB_14910 133662 136094 -1 hsdR Type I restriction enzyme EcoEI endonuclease subunit Morganella morganii S3
21 group_388 LHKJJB_15615 6422 8182 -1 sSL2 Superfamily II DNA or RNA helicase Morganella morganii S3
22 group_3458 LHKJJB_16455 66355 68685 -1 DEAD/DEAH box helicase Morganella morganii S3
23 group_3387 HKOGLL_05880 230995 232572 1 Helicase Morganella morganii S5
24 group_3637 HKOGLL_08840 8 2989 -1 DEAD/DEAH box helicase family protein Morganella morganii S5
25 group_322 HKOGLL_12305 18163 20175 -1 uvrB excinuclease ABC subunit UvrB Morganella morganii S5
26 group_3303 HKOGLL_13530 133662 136094 -1 hsdR Type I restriction enzyme EcoEI endonuclease subunit Morganella morganii S5
27 group_388 HKOGLL_14735 5634 7394 -1 sSL2 Superfamily II DNA or RNA helicase Morganella morganii S5
28 group_3458 HKOGLL_16225 66355 68685 -1 DEAD/DEAH box helicase Morganella morganii S5
29 group_322 F4V73_RS00740 154226 156241 1 uvrB excinuclease ABC subunit UvrB Morganella psychrotolerans
30 group_388 F4V73_RS07690 1607984 1609744 1 DEAD/DEAH box helicase Morganella psychrotolerans
31 group_322 F4V73_RS18290 96901 98547 1 DEAD/DEAH box helicase Morganella psychrotolerans
32 group_322 PMI_RS02990 659167 661176 1 uvrB excinuclease ABC subunit UvrB Proteus mirabilis HI4320
33 group_388 PMI_RS04060 908621 910384 -1 DEAD/DEAH box helicase Proteus mirabilis HI4320