Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF04851, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 34 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link | PF04851 |
---|---|
Description | Type III restriction enzyme, res subunit |
Occurence in the database
PF04851 is associated with 34 different proteins (see tab "Protein list" and "Profile") |
The 34 proteins are classified into 6 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_322 | FBDBKF_09600 | 17382 | 19394 | -1 | uvrB | excinuclease ABC subunit UvrB | Morganella morganii S1 |
1 | group_3303 | FBDBKF_10270 | 5642 | 8074 | 1 | hsdR | Type I restriction enzyme EcoEI endonuclease subunit | Morganella morganii S1 |
2 | group_3387 | FBDBKF_13190 | 27210 | 28787 | -1 | Helicase | Morganella morganii S1 | |
3 | group_388 | FBDBKF_14890 | 78428 | 80188 | 1 | sSL2 | Superfamily II DNA or RNA helicase | Morganella morganii S1 |
4 | group_3458 | FBDBKF_15665 | 67055 | 69385 | -1 | DEAD/DEAH box helicase | Morganella morganii S1 | |
5 | group_3637 | EHELCC_04305 | 188153 | 191134 | 1 | DEAD/DEAH box helicase family protein | Morganella morganii S2 | |
6 | group_322 | EHELCC_04400 | 209347 | 211359 | -1 | uvrB | excinuclease ABC subunit UvrB | Morganella morganii S2 |
7 | group_3387 | EHELCC_08905 | 246404 | 247981 | 1 | Helicase | Morganella morganii S2 | |
8 | group_3303 | EHELCC_14605 | 5632 | 8064 | 1 | hsdR | Type I restriction enzyme EcoEI endonuclease subunit | Morganella morganii S2 |
9 | group_388 | EHELCC_15695 | 108504 | 110264 | 1 | sSL2 | Superfamily II DNA or RNA helicase | Morganella morganii S2 |
10 | group_3458 | EHELCC_16020 | 66355 | 68685 | -1 | DEAD/DEAH box helicase | Morganella morganii S2 | |
11 | group_3637 | NLDBIP_04305 | 187949 | 190930 | 1 | DEAD/DEAH box helicase family protein | Morganella morganii S4 | |
12 | group_322 | NLDBIP_04400 | 209143 | 211155 | -1 | uvrB | excinuclease ABC subunit UvrB | Morganella morganii S4 |
13 | group_3387 | NLDBIP_09230 | 246404 | 247981 | 1 | Helicase | Morganella morganii S4 | |
14 | group_3303 | NLDBIP_14435 | 5632 | 8064 | 1 | hsdR | Type I restriction enzyme EcoEI endonuclease subunit | Morganella morganii S4 |
15 | group_388 | NLDBIP_16225 | 108504 | 110264 | 1 | sSL2 | Superfamily II DNA or RNA helicase | Morganella morganii S4 |
16 | group_3458 | NLDBIP_16345 | 11978 | 14308 | 1 | DEAD/DEAH box helicase | Morganella morganii S4 | |
17 | group_3387 | LHKJJB_05035 | 9178 | 10755 | -1 | Helicase | Morganella morganii S3 | |
18 | group_3637 | LHKJJB_10135 | 188063 | 191044 | 1 | DEAD/DEAH box helicase family protein | Morganella morganii S3 | |
19 | group_322 | LHKJJB_14230 | 124223 | 126235 | 1 | uvrB | excinuclease ABC subunit UvrB | Morganella morganii S3 |
20 | group_3303 | LHKJJB_14910 | 133662 | 136094 | -1 | hsdR | Type I restriction enzyme EcoEI endonuclease subunit | Morganella morganii S3 |
21 | group_388 | LHKJJB_15615 | 6422 | 8182 | -1 | sSL2 | Superfamily II DNA or RNA helicase | Morganella morganii S3 |
22 | group_3458 | LHKJJB_16455 | 66355 | 68685 | -1 | DEAD/DEAH box helicase | Morganella morganii S3 | |
23 | group_3387 | HKOGLL_05880 | 230995 | 232572 | 1 | Helicase | Morganella morganii S5 | |
24 | group_3637 | HKOGLL_08840 | 8 | 2989 | -1 | DEAD/DEAH box helicase family protein | Morganella morganii S5 | |
25 | group_322 | HKOGLL_12305 | 18163 | 20175 | -1 | uvrB | excinuclease ABC subunit UvrB | Morganella morganii S5 |
26 | group_3303 | HKOGLL_13530 | 133662 | 136094 | -1 | hsdR | Type I restriction enzyme EcoEI endonuclease subunit | Morganella morganii S5 |
27 | group_388 | HKOGLL_14735 | 5634 | 7394 | -1 | sSL2 | Superfamily II DNA or RNA helicase | Morganella morganii S5 |
28 | group_3458 | HKOGLL_16225 | 66355 | 68685 | -1 | DEAD/DEAH box helicase | Morganella morganii S5 | |
29 | group_322 | F4V73_RS00740 | 154226 | 156241 | 1 | uvrB | excinuclease ABC subunit UvrB | Morganella psychrotolerans |
30 | group_388 | F4V73_RS07690 | 1607984 | 1609744 | 1 | DEAD/DEAH box helicase | Morganella psychrotolerans | |
31 | group_322 | F4V73_RS18290 | 96901 | 98547 | 1 | DEAD/DEAH box helicase | Morganella psychrotolerans | |
32 | group_322 | PMI_RS02990 | 659167 | 661176 | 1 | uvrB | excinuclease ABC subunit UvrB | Proteus mirabilis HI4320 |
33 | group_388 | PMI_RS04060 | 908621 | 910384 | -1 | DEAD/DEAH box helicase | Proteus mirabilis HI4320 |