PF04851

Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF04851
Protein list: lists the 34 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.

Description

External link PF04851
Description Type III restriction enzyme, res subunit

Occurence in the database

PF04851 is associated with 34 different proteins
The 34 proteins are classified into 6 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_293 FBDBKF_09600 17382 19394 -1 uvrB excinuclease ABC subunit UvrB Morganella morganii S1
1 group_3306 FBDBKF_10270 5642 8074 1 hsdR Type I restriction enzyme EcoEI endonuclease subunit Morganella morganii S1
2 group_3385 FBDBKF_13190 27210 28787 -1 Helicase Morganella morganii S1
3 group_2022 FBDBKF_14890 78428 80188 1 sSL2 Superfamily II DNA or RNA helicase Morganella morganii S1
4 group_3458 FBDBKF_15665 67055 69385 -1 DEAD/DEAH box helicase Morganella morganii S1
5 group_3636 EHELCC_04305 188153 191134 1 DEAD/DEAH box helicase family protein Morganella morganii S2
6 group_293 EHELCC_04400 209347 211359 -1 uvrB excinuclease ABC subunit UvrB Morganella morganii S2
7 group_3385 EHELCC_08905 246404 247981 1 Helicase Morganella morganii S2
8 group_3306 EHELCC_14605 5632 8064 1 hsdR Type I restriction enzyme EcoEI endonuclease subunit Morganella morganii S2
9 group_2022 EHELCC_15695 108504 110264 1 sSL2 Superfamily II DNA or RNA helicase Morganella morganii S2
10 group_3458 EHELCC_16020 66355 68685 -1 DEAD/DEAH box helicase Morganella morganii S2
11 group_3636 NLDBIP_04305 187949 190930 1 DEAD/DEAH box helicase family protein Morganella morganii S4
12 group_293 NLDBIP_04400 209143 211155 -1 uvrB excinuclease ABC subunit UvrB Morganella morganii S4
13 group_3385 NLDBIP_09230 246404 247981 1 Helicase Morganella morganii S4
14 group_3306 NLDBIP_14435 5632 8064 1 hsdR Type I restriction enzyme EcoEI endonuclease subunit Morganella morganii S4
15 group_2022 NLDBIP_16225 108504 110264 1 sSL2 Superfamily II DNA or RNA helicase Morganella morganii S4
16 group_3458 NLDBIP_16345 11978 14308 1 DEAD/DEAH box helicase Morganella morganii S4
17 group_3385 LHKJJB_05035 9178 10755 -1 Helicase Morganella morganii S3
18 group_3636 LHKJJB_10135 188063 191044 1 DEAD/DEAH box helicase family protein Morganella morganii S3
19 group_293 LHKJJB_14230 124223 126235 1 uvrB excinuclease ABC subunit UvrB Morganella morganii S3
20 group_3306 LHKJJB_14910 133662 136094 -1 hsdR Type I restriction enzyme EcoEI endonuclease subunit Morganella morganii S3
21 group_2022 LHKJJB_15615 6422 8182 -1 sSL2 Superfamily II DNA or RNA helicase Morganella morganii S3
22 group_3458 LHKJJB_16455 66355 68685 -1 DEAD/DEAH box helicase Morganella morganii S3
23 group_3385 HKOGLL_05880 230995 232572 1 Helicase Morganella morganii S5
24 group_3636 HKOGLL_08840 8 2989 -1 DEAD/DEAH box helicase family protein Morganella morganii S5
25 group_293 HKOGLL_12305 18163 20175 -1 uvrB excinuclease ABC subunit UvrB Morganella morganii S5
26 group_3306 HKOGLL_13530 133662 136094 -1 hsdR Type I restriction enzyme EcoEI endonuclease subunit Morganella morganii S5
27 group_2022 HKOGLL_14735 5634 7394 -1 sSL2 Superfamily II DNA or RNA helicase Morganella morganii S5
28 group_3458 HKOGLL_16225 66355 68685 -1 DEAD/DEAH box helicase Morganella morganii S5
29 group_293 F4V73_RS00740 154226 156241 1 uvrB excinuclease ABC subunit UvrB Morganella psychrotolerans
30 group_2022 F4V73_RS07690 1607984 1609744 1 DEAD/DEAH box helicase Morganella psychrotolerans
31 group_293 F4V73_RS18290 96901 98547 1 DEAD/DEAH box helicase Morganella psychrotolerans
32 group_293 PMI_RS02990 659167 661176 1 uvrB excinuclease ABC subunit UvrB Proteus mirabilis HI4320
33 group_2022 PMI_RS04060 908621 910384 -1 DEAD/DEAH box helicase Proteus mirabilis HI4320