PF03606


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03606, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 12 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03606
Description C4-dicarboxylate anaerobic carrier

Occurence in the database

PF03606 is associated with 12 different proteins (see tab "Protein list" and "Profile")
The 12 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1188 FBDBKF_06850 34918 36306 1 dcuC anaerobic C4-dicarboxylate transporter DcuC Morganella morganii S1
1 group_1188 EHELCC_04120 149880 151268 -1 dcuC anaerobic C4-dicarboxylate transporter DcuC Morganella morganii S2
2 group_1188 NLDBIP_04120 149676 151064 -1 dcuC anaerobic C4-dicarboxylate transporter DcuC Morganella morganii S4
3 group_1188 LHKJJB_09950 149790 151178 -1 dcuC anaerobic C4-dicarboxylate transporter DcuC Morganella morganii S3
4 group_1188 HKOGLL_09025 39874 41262 1 dcuC anaerobic C4-dicarboxylate transporter DcuC Morganella morganii S5
5 group_1188 F4V73_RS01000 213594 214994 1 dcuC anaerobic C4-dicarboxylate transporter DcuC Morganella psychrotolerans
6 group_3692 F4V73_RS13170 252193 253563 1 dcuC C4-dicarboxylate transporter DcuC Morganella psychrotolerans
7 group_3692 PMI_RS00705 181529 182896 -1 dcuC C4-dicarboxylate transporter DcuC Proteus mirabilis HI4320
8 group_3692 PMI_RS03080 677340 678707 -1 dcuC C4-dicarboxylate transporter DcuC Proteus mirabilis HI4320
9 group_1188 PMI_RS03210 709506 710867 1 dcuC anaerobic C4-dicarboxylate transporter DcuC Proteus mirabilis HI4320
10 group_1612 PMI_RS15250 3383432 3384838 1 AbgT family transporter Proteus mirabilis HI4320
11 group_3692 PMI_RS18285 4010241 4011515 -1 dcuC C4-dicarboxylate transporter DcuC Proteus mirabilis HI4320