Homologs in group_1188

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06850 FBDBKF_06850 100.0 Morganella morganii S1 dcuC anaerobic C4-dicarboxylate transporter DcuC
EHELCC_04120 EHELCC_04120 100.0 Morganella morganii S2 dcuC anaerobic C4-dicarboxylate transporter DcuC
LHKJJB_09950 LHKJJB_09950 100.0 Morganella morganii S3 dcuC anaerobic C4-dicarboxylate transporter DcuC
HKOGLL_09025 HKOGLL_09025 100.0 Morganella morganii S5 dcuC anaerobic C4-dicarboxylate transporter DcuC
F4V73_RS01000 F4V73_RS01000 94.4 Morganella psychrotolerans dcuC anaerobic C4-dicarboxylate transporter DcuC
PMI_RS03210 PMI_RS03210 78.5 Proteus mirabilis HI4320 dcuC anaerobic C4-dicarboxylate transporter DcuC

Distribution of the homologs in the orthogroup group_1188

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1188

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ABP5 0.0 584 77 1 446 3 dcuC Anaerobic C4-dicarboxylate transporter DcuC Shigella flexneri
P0ABP3 0.0 584 77 1 446 1 dcuC Anaerobic C4-dicarboxylate transporter DcuC Escherichia coli (strain K12)
P0ABP4 0.0 584 77 1 446 3 dcuC Anaerobic C4-dicarboxylate transporter DcuC Escherichia coli O157:H7
Q8FJZ8 0.0 582 76 1 446 3 dcuC Anaerobic C4-dicarboxylate transporter DcuC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q9KLS6 0.0 522 59 3 462 3 dcuC Probable anaerobic C4-dicarboxylate transporter DcuC Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P45428 4.54e-87 276 34 4 457 1 dcuD Putative cryptic C4-dicarboxylate transporter DcuD Escherichia coli (strain K12)
P44018 6.38e-10 63 26 8 245 5 HI_0585 Putative uncharacterized transporter HI_0585 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_04120
Feature type CDS
Gene dcuC
Product anaerobic C4-dicarboxylate transporter DcuC
Location 149676 - 151064 (strand: -1)
Length 1389 (nucleotides) / 462 (amino acids)

Contig

Accession ZDB_520
Length 336657 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1188
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03606 C4-dicarboxylate anaerobic carrier

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3069 Energy production and conversion (C) C C4-dicarboxylate transporter DcuC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03326 C4-dicarboxylate transporter, DcuC family - -

Protein Sequence

MLDLLIGAVVAVGVGRYIIKGYSATGVLMVGGLLLLIISVIMGKNILPSAATSTGWGPTNIIEYVKYLLMNRGGDLGMMIMVLCGFAAYMTHIGANDVVIKMVSKPLQVVNSPYLLMIVAYFIACLMSLAVSSATGLGVLLMATLFPVMVNVGISRGAAAAICASPAAIILAPTSGDVVIAAEASQIPLKEFAFSLTLPISIVAIVSMAIAHYFWQRFLDRKEDIKSEILDVKEITTNAPKFYAILPFMPIIGVLLFDGKPFSIGFLSHIVLPELHIITIIVGCIILSAIIEFLRGFDGKKVYAGLDVCYRGMADAFATVVMLLVAAGVFAQGLSTVGFISGLISLAQSFGSGAIIMMIALVIITMLAAMTTGSGNAPFYAFVELIPRLAQQMGINPAYLVIPMLQASNLGRTMSPVSGVVVAVAGMAKISPFEVVKRTSVPVLVGLLVVIVATEFLVPVTL

Flanking regions ( +/- flanking 50bp)

CAGAGTGCATTAATCATTTTTATAAATAAAAATACCAGACAGGAGCAGAAATGTTAGATCTTCTTATTGGTGCTGTCGTCGCCGTCGGCGTCGGGCGCTATATTATTAAAGGGTATTCAGCCACAGGGGTGCTGATGGTCGGGGGCTTACTGCTTCTGATCATCAGTGTCATCATGGGGAAAAACATCCTGCCGTCCGCCGCCACCTCCACCGGCTGGGGACCGACAAACATTATTGAGTATGTGAAGTACCTGCTGATGAACCGCGGCGGCGACCTCGGTATGATGATCATGGTACTGTGCGGCTTTGCGGCTTATATGACTCATATCGGTGCCAACGACGTGGTCATCAAAATGGTCTCCAAACCGTTACAGGTCGTGAACTCTCCGTACCTGCTGATGATCGTGGCCTACTTTATTGCCTGTCTGATGTCTCTGGCGGTTTCCTCCGCCACCGGTCTCGGTGTGTTACTGATGGCAACCCTGTTCCCGGTGATGGTGAACGTGGGGATCAGCCGTGGTGCGGCGGCGGCTATCTGTGCCTCTCCGGCGGCAATTATCCTGGCACCGACCTCCGGCGATGTGGTAATTGCGGCAGAAGCATCTCAGATCCCGCTGAAAGAGTTTGCATTCAGCCTGACTCTGCCGATTTCTATCGTGGCGATTGTATCTATGGCGATTGCTCACTATTTCTGGCAGCGTTTCCTCGATCGCAAAGAAGATATCAAATCTGAGATCCTGGACGTCAAAGAAATCACCACCAATGCGCCGAAATTTTATGCCATTCTGCCGTTTATGCCGATCATCGGCGTACTGCTGTTTGATGGTAAGCCGTTCAGCATCGGTTTCCTGAGCCATATCGTGCTGCCTGAATTACACATCATCACGATTATTGTCGGCTGTATTATTTTGTCTGCCATCATTGAATTCCTCCGTGGTTTTGACGGCAAGAAAGTCTATGCCGGGCTGGATGTCTGCTACCGTGGTATGGCGGATGCCTTTGCCACCGTGGTTATGCTGCTGGTGGCGGCCGGTGTGTTCGCTCAGGGCCTGAGCACCGTCGGCTTTATCTCCGGTCTGATCAGCCTGGCGCAGTCTTTCGGTTCCGGCGCGATTATCATGATGATTGCTCTGGTGATTATTACCATGCTGGCGGCGATGACTACCGGTTCCGGTAATGCGCCGTTCTATGCGTTTGTGGAGCTGATCCCGCGCCTGGCACAGCAGATGGGTATCAACCCGGCGTACCTGGTGATCCCGATGTTACAGGCATCCAACCTCGGCCGTACCATGTCACCGGTTTCCGGTGTGGTGGTGGCGGTTGCCGGTATGGCGAAAATTTCACCGTTTGAAGTGGTGAAACGGACATCCGTTCCGGTGCTTGTCGGCCTGCTGGTGGTGATTGTCGCCACTGAGTTCCTGGTGCCGGTAACACTGTAAAACGACACGGGCCGCACCGGTTATCCGCTGCGGCTTTTTTGTATCAGTAC