Homologs in group_3692

Help

3 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS13170 F4V73_RS13170 39.7 Morganella psychrotolerans dcuC C4-dicarboxylate transporter DcuC
PMI_RS00705 PMI_RS00705 40.1 Proteus mirabilis HI4320 dcuC C4-dicarboxylate transporter DcuC
PMI_RS18285 PMI_RS18285 31.0 Proteus mirabilis HI4320 dcuC C4-dicarboxylate transporter DcuC

Distribution of the homologs in the orthogroup group_3692

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_3692

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P45428 5.43e-122 366 42 3 461 1 dcuD Putative cryptic C4-dicarboxylate transporter DcuD Escherichia coli (strain K12)
Q9KLS6 2.02e-76 249 35 2 438 3 dcuC Probable anaerobic C4-dicarboxylate transporter DcuC Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q8FJZ8 2e-56 196 34 3 394 3 dcuC Anaerobic C4-dicarboxylate transporter DcuC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ABP5 3.55e-56 196 34 3 394 3 dcuC Anaerobic C4-dicarboxylate transporter DcuC Shigella flexneri
P0ABP3 3.55e-56 196 34 3 394 1 dcuC Anaerobic C4-dicarboxylate transporter DcuC Escherichia coli (strain K12)
P0ABP4 3.55e-56 196 34 3 394 3 dcuC Anaerobic C4-dicarboxylate transporter DcuC Escherichia coli O157:H7
P44018 6.46e-14 75 33 8 204 5 HI_0585 Putative uncharacterized transporter HI_0585 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS03080
Feature type CDS
Gene dcuC
Product C4-dicarboxylate transporter DcuC
Location 677340 - 678707 (strand: -1)
Length 1368 (nucleotides) / 455 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_3692
Orthogroup size 4
N. genomes 2

Actions

Genomic region

Domains

PF03606 C4-dicarboxylate anaerobic carrier

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3069 Energy production and conversion (C) C C4-dicarboxylate transporter DcuC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03326 C4-dicarboxylate transporter, DcuC family - -

Protein Sequence

MTGLIIAALVTALVVYLLARGYKPQPVLLLGGMLLLLLTASLDLNPLLPENKSTQFKYFDIFQIFTDIMSSRLAGLGLTLMAIAGFSRYMEHVGASRALFAIFEKPLKTIKSPYLLLVISFLVTQILVIFIPSHAGLGMLLMVTMYPILIRSGISPLSALAVIGCCQFIDHGPGSGNVIMAAKTADIEPAVYFVQHQLPITIPIIIAVAITHFFIQRWWDKREGFVFDPTAIDNVKEEGSQVPLSYALLPVIPLILIIGFSPLFHNYIKLEVTTAMIISTVIALVFEYVRLRDAKAVMNSFMLFFEGMGKQFVLVVSLIVSGEFFANGLLKSGAVDTLISSAQDAGFGIAAMIIVMSAILALAAFLMGSGNAAFFSFAALTPKIAAFLKVDVITLILPMQIMTSFGRTVSPITAAIVAIAGIANVSPFQIVKRTAIPMAIAATVNLAMTFWFLYT

Flanking regions ( +/- flanking 50bp)

GCATTAAATCAATAACAACAATACTGCATCACGACACTGGGGAATTAATTATGACTGGTTTAATTATTGCCGCGCTAGTTACTGCGTTGGTAGTTTATTTGCTGGCTCGAGGTTATAAACCTCAACCTGTGTTATTACTCGGAGGCATGCTGTTATTGCTCCTTACAGCTTCTCTCGATCTCAACCCTTTATTACCGGAAAATAAATCTACACAATTTAAGTATTTTGATATTTTCCAAATTTTTACCGATATTATGAGCTCGCGTTTAGCGGGTTTAGGTTTAACCTTAATGGCAATTGCTGGTTTCTCACGTTATATGGAACACGTGGGCGCCAGCCGAGCTTTATTTGCTATTTTTGAAAAACCATTAAAAACGATTAAATCCCCCTACTTATTACTGGTTATTTCATTTTTAGTCACACAAATTTTAGTTATTTTTATTCCTAGCCATGCAGGTTTAGGAATGTTACTCATGGTAACGATGTACCCTATTTTAATTCGCTCAGGTATTAGTCCTCTATCTGCTTTAGCTGTTATCGGTTGTTGTCAATTTATTGATCATGGACCCGGCTCTGGAAATGTTATTATGGCGGCTAAAACAGCGGATATTGAACCTGCAGTCTATTTTGTTCAACACCAACTCCCTATCACTATTCCTATTATCATTGCGGTTGCTATTACCCATTTCTTTATTCAACGTTGGTGGGATAAACGTGAGGGTTTTGTTTTCGACCCAACAGCTATTGATAATGTAAAAGAAGAAGGAAGTCAGGTGCCATTATCATATGCCTTATTACCCGTGATCCCTTTAATTCTCATTATTGGTTTTAGTCCGTTATTTCATAATTACATTAAATTAGAAGTGACTACCGCAATGATTATTAGTACGGTTATTGCACTAGTCTTTGAATATGTGCGATTGCGCGATGCTAAAGCGGTAATGAACAGTTTTATGTTATTCTTTGAAGGCATGGGAAAACAGTTTGTTTTAGTTGTATCGTTGATTGTATCTGGGGAATTTTTTGCTAATGGATTACTAAAAAGTGGCGCGGTAGATACCTTAATTAGTTCTGCTCAAGATGCTGGCTTTGGTATTGCTGCGATGATTATTGTGATGAGTGCCATCTTAGCATTAGCAGCCTTTTTAATGGGATCGGGTAATGCTGCATTCTTTTCATTTGCCGCATTAACACCCAAAATTGCTGCGTTCTTAAAAGTCGATGTCATCACTTTAATTTTACCTATGCAAATTATGACCAGCTTTGGTCGCACAGTTTCACCTATTACGGCAGCTATTGTTGCTATTGCAGGAATTGCCAATGTCTCACCTTTCCAAATAGTGAAAAGAACCGCAATTCCAATGGCTATCGCCGCTACCGTTAACTTAGCGATGACATTCTGGTTTTTATACACATAATTTACAGCACCGATTGTGTATCAAATAAAATAATAAGTTGTATTCCCTTC