Homologs in group_1612

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10605 FBDBKF_10605 26.6 Morganella morganii S1 atoE Short chain fatty acids transporter
EHELCC_14940 EHELCC_14940 26.6 Morganella morganii S2 atoE Short chain fatty acids transporter
NLDBIP_14770 NLDBIP_14770 26.6 Morganella morganii S4 atoE Short chain fatty acids transporter
LHKJJB_14575 LHKJJB_14575 26.6 Morganella morganii S3 atoE Short chain fatty acids transporter
HKOGLL_13195 HKOGLL_13195 26.6 Morganella morganii S5 atoE Short chain fatty acids transporter
F4V73_RS14315 F4V73_RS14315 26.1 Morganella psychrotolerans - TIGR00366 family protein

Distribution of the homologs in the orthogroup group_1612

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1612

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P55908 1.03e-111 341 38 4 475 4 ycgA Uncharacterized protein YcgA Bacillus subtilis (strain 168)
P44023 3.69e-55 194 27 10 504 4 HI_0594 Uncharacterized protein HI_0594 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P39263 1.41e-53 190 29 11 482 4 yfcC Putative basic amino acid antiporter YfcC Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS15250
Feature type CDS
Gene -
Product AbgT family transporter
Location 3383432 - 3384838 (strand: 1)
Length 1407 (nucleotides) / 468 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1612
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03606 C4-dicarboxylate anaerobic carrier

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1288 General function prediction only (R) R Predicted membrane transporter YfcC, affects glyoxylate shunt

Protein Sequence

MEKSKKIKWAMPDAFIIIFGIVILAAIATYLIPAGSYQRETVNGLNRVVPNSFNYVAQNPASLMDVFYAIPVGLKQSASIIFLIFMIGGAIAIYDRTRAIDSGINALIVKTKGNYQALIITVAFIFGMLSSLGLAANAVIAFIPIGIALSRSMKLDAITGVAVVYLGYYAGNAVGVLDPTILGTAQTLAEVPLFSGVIFRVVLFAILIVVTIAYIVWYARRIANDPTTSYMYGIAKDDPDYEQPHTQSLDSTFSLRQKLSLVVFIAFIGLFLYGAFEYKWGIEHLSAIFIMMSIVVAAMFKIAPNDYIKTFMKGAQSLVYGALVVGIARAVIVILDEGRVLDSIVQATLVPLQQTSHFWGAQLLYFFNLLFNLLVTSGTGQASIVMPIMVPILDILDLTRQTGVLILKLGDGFTNIITPTSGVLMAVLAVGKVPWTRWVKFVFPILMIWVVIGMAAIGIATAISYGPV

Flanking regions ( +/- flanking 50bp)

CAGTGCTATTTGCAAATGTTATTAAGCGTCTGTCTCAATAAGGTGAATGTATGGAAAAGAGTAAAAAAATAAAATGGGCTATGCCTGATGCCTTTATTATTATTTTTGGTATCGTTATTTTAGCGGCCATCGCCACCTATTTGATCCCCGCGGGAAGTTATCAGCGGGAAACCGTTAATGGATTAAACCGCGTTGTCCCTAATAGCTTTAATTATGTTGCACAAAATCCAGCTTCATTGATGGATGTGTTTTATGCAATCCCTGTAGGGTTAAAACAATCTGCCAGTATTATTTTCTTGATCTTTATGATTGGTGGCGCGATTGCCATTTATGATCGCACCCGTGCTATTGATTCAGGTATTAATGCGCTTATTGTTAAAACCAAAGGTAATTATCAAGCTCTTATTATTACGGTTGCTTTTATTTTTGGTATGTTGTCATCCCTTGGGCTTGCGGCCAATGCCGTTATTGCGTTTATCCCTATAGGAATAGCCCTTTCGCGCTCAATGAAACTTGATGCTATTACGGGGGTTGCAGTTGTTTATTTAGGCTATTATGCAGGTAATGCGGTTGGTGTATTAGATCCAACTATTTTAGGTACTGCACAAACATTAGCTGAAGTTCCTCTTTTTTCTGGTGTTATTTTTCGAGTTGTATTATTCGCTATCTTAATTGTTGTCACTATTGCTTATATTGTCTGGTATGCCAGACGTATTGCGAATGATCCAACGACCAGTTATATGTATGGAATAGCTAAAGATGATCCTGATTATGAACAGCCACACACTCAATCATTAGATAGCACCTTCTCATTGAGGCAAAAATTGAGTTTGGTGGTATTTATAGCGTTTATTGGATTGTTTTTATATGGCGCTTTTGAATATAAATGGGGGATTGAACATCTATCAGCCATTTTTATTATGATGAGCATTGTTGTGGCGGCTATGTTTAAAATTGCCCCTAATGACTATATCAAAACCTTTATGAAAGGTGCTCAATCTTTAGTGTATGGGGCATTGGTGGTGGGGATCGCCAGAGCGGTTATTGTTATTTTAGATGAAGGACGAGTGCTTGATTCTATTGTACAAGCCACATTAGTGCCATTACAGCAAACCTCTCACTTTTGGGGCGCTCAATTACTTTATTTCTTTAATTTACTGTTTAACTTGCTAGTCACATCAGGAACGGGACAAGCATCGATTGTTATGCCTATTATGGTGCCTATTCTCGATATTCTTGATCTTACACGTCAAACCGGTGTCCTTATTTTAAAACTCGGTGATGGCTTTACCAATATTATTACCCCAACATCAGGTGTACTTATGGCGGTACTGGCGGTAGGTAAAGTGCCGTGGACGCGTTGGGTTAAATTTGTATTCCCTATTTTAATGATTTGGGTCGTGATAGGTATGGCTGCAATTGGTATTGCTACCGCAATAAGTTATGGACCAGTGTAGCTTTGTACTAACGGATTATTAACGATAAATAGGTTATTAAGTATAAATAA