Homologs in group_162

Help

8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06850 FBDBKF_06850 29.3 Morganella morganii S1 dcuC anaerobic C4-dicarboxylate transporter DcuC
EHELCC_04120 EHELCC_04120 29.3 Morganella morganii S2 dcuC anaerobic C4-dicarboxylate transporter DcuC
NLDBIP_04120 NLDBIP_04120 29.3 Morganella morganii S4 dcuC anaerobic C4-dicarboxylate transporter DcuC
LHKJJB_09950 LHKJJB_09950 29.3 Morganella morganii S3 dcuC anaerobic C4-dicarboxylate transporter DcuC
HKOGLL_09025 HKOGLL_09025 29.3 Morganella morganii S5 dcuC anaerobic C4-dicarboxylate transporter DcuC
F4V73_RS01000 F4V73_RS01000 29.4 Morganella psychrotolerans dcuC anaerobic C4-dicarboxylate transporter DcuC
PMI_RS03080 PMI_RS03080 31.8 Proteus mirabilis HI4320 dcuC C4-dicarboxylate transporter DcuC
PMI_RS03210 PMI_RS03210 28.4 Proteus mirabilis HI4320 dcuC anaerobic C4-dicarboxylate transporter DcuC

Distribution of the homologs in the orthogroup group_162

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_162

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P44018 1.59e-89 275 52 1 279 5 HI_0585 Putative uncharacterized transporter HI_0585 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P44019 2.01e-44 154 65 0 137 5 HI_0586 Putative uncharacterized transporter HI_0586 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P45428 1.34e-17 88 25 17 455 1 dcuD Putative cryptic C4-dicarboxylate transporter DcuD Escherichia coli (strain K12)
Q9KLS6 2.5e-17 87 28 13 373 3 dcuC Probable anaerobic C4-dicarboxylate transporter DcuC Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q8FJZ8 4.62e-09 61 26 12 373 3 dcuC Anaerobic C4-dicarboxylate transporter DcuC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ABP5 5.72e-09 61 26 12 373 3 dcuC Anaerobic C4-dicarboxylate transporter DcuC Shigella flexneri
P0ABP3 5.72e-09 61 26 12 373 1 dcuC Anaerobic C4-dicarboxylate transporter DcuC Escherichia coli (strain K12)
P0ABP4 5.72e-09 61 26 12 373 3 dcuC Anaerobic C4-dicarboxylate transporter DcuC Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS18285
Feature type CDS
Gene dcuC
Product C4-dicarboxylate transporter DcuC
Location 4010241 - 4011515 (strand: -1)
Length 1275 (nucleotides) / 424 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_162
Orthogroup size 9
N. genomes 7

Actions

Genomic region

Domains

PF03606 C4-dicarboxylate anaerobic carrier

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3069 Energy production and conversion (C) C C4-dicarboxylate transporter DcuC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03326 C4-dicarboxylate transporter, DcuC family - -

Protein Sequence

MVMQLIAVAVIIVTVYLLIKKYETRMVLIGAGLLLCILSLTPLDAFTAFSDRMVSSSLIQAICSSMGFAYVMKYTKCDMHLVHVLSKVLTRLGFFLIPATVIVTYFINIAIPSAAGCAAAVGATLIPLLIAARIHPAIAGGAVLCGTIGSMLSPGMSHNAFVANMANMEVVDLIARHSPYSLMAGAIAAVSLAVVALVKKEFKVSSVATDVANSSSQATPEAVRPNYLYATAPFIPLILLILPFFETFSTFKLSVPAAMLIGAIYALIITLTNPAQITKEFFKGMGNAYGDVLGIIIAAAVFAAGLKASGLIDAFINFLTHSPEFARWGGTLGPFLMGIITGSGDAAAFAFNETVTPHAAQFGYEIPDMGMAAALSGALGRTMSPLAGAAIVCAGLANINPMEIAKRTAPGMIIGVIAVALFML

Flanking regions ( +/- flanking 50bp)

GGGTTATTTTATTCATTAAGCACATTGTCATAATTAACTAGGGGATCACCATGGTGATGCAACTTATAGCCGTAGCCGTTATTATCGTAACGGTCTATTTGCTAATAAAAAAATATGAAACCCGTATGGTATTGATCGGTGCCGGCTTATTGTTATGTATTTTAAGTCTGACACCGCTCGATGCTTTCACTGCATTTAGTGATCGCATGGTTTCATCATCATTAATTCAAGCTATCTGTTCAAGTATGGGTTTTGCCTACGTGATGAAATACACCAAGTGCGATATGCACTTAGTCCATGTTTTATCAAAAGTCCTGACTCGTCTTGGTTTCTTTCTTATTCCAGCAACAGTGATCGTCACTTATTTTATTAATATTGCGATCCCATCAGCAGCCGGATGTGCAGCGGCCGTTGGTGCAACGCTTATTCCGTTATTAATCGCGGCACGTATTCACCCCGCAATCGCAGGTGGTGCGGTGTTATGTGGTACTATCGGTTCCATGTTAAGCCCTGGTATGTCACATAACGCTTTTGTAGCGAATATGGCCAATATGGAAGTCGTCGATTTAATCGCTCGCCATAGCCCATATAGTTTAATGGCAGGAGCAATAGCAGCAGTTTCACTCGCTGTTGTCGCTTTAGTGAAAAAAGAGTTTAAAGTCTCTTCTGTAGCCACAGATGTCGCCAACTCATCTTCTCAAGCAACACCAGAAGCAGTACGCCCTAATTATTTATATGCAACTGCGCCTTTTATCCCATTAATTCTATTAATACTGCCTTTCTTCGAAACATTTAGTACTTTTAAACTATCTGTGCCAGCAGCAATGTTAATTGGTGCCATTTATGCACTGATCATCACATTAACCAATCCGGCTCAAATTACTAAAGAGTTCTTTAAAGGGATGGGTAATGCTTATGGGGATGTGCTGGGGATCATTATCGCAGCAGCCGTATTTGCAGCCGGTCTAAAAGCATCAGGTCTGATTGATGCCTTTATCAACTTCTTAACTCACTCACCTGAATTTGCCCGTTGGGGTGGTACATTAGGGCCATTCTTAATGGGGATTATTACTGGCTCTGGTGATGCTGCAGCATTTGCTTTCAACGAAACCGTCACACCACACGCTGCACAATTTGGTTATGAAATTCCTGACATGGGTATGGCAGCAGCATTATCAGGCGCATTAGGTCGTACAATGTCACCATTAGCAGGGGCAGCCATTGTTTGTGCTGGTCTTGCCAATATCAACCCTATGGAAATCGCAAAACGTACTGCACCGGGTATGATTATCGGCGTCATCGCTGTTGCGTTATTCATGTTATAAGTGGAGAAATGATTATGTCAGTTTCACTAGAACAATTAATTAAATGGCGT