Homologs in group_3738

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1 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS00705 PMI_RS00705 86.1 Proteus mirabilis HI4320 dcuC C4-dicarboxylate transporter DcuC

Distribution of the homologs in the orthogroup group_3738

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3738

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P45428 8.37e-99 306 38 5 464 1 dcuD Putative cryptic C4-dicarboxylate transporter DcuD Escherichia coli (strain K12)
P0ABP5 2.26e-95 298 43 5 433 3 dcuC Anaerobic C4-dicarboxylate transporter DcuC Shigella flexneri
P0ABP3 2.26e-95 298 43 5 433 1 dcuC Anaerobic C4-dicarboxylate transporter DcuC Escherichia coli (strain K12)
P0ABP4 2.26e-95 298 43 5 433 3 dcuC Anaerobic C4-dicarboxylate transporter DcuC Escherichia coli O157:H7
Q8FJZ8 6.14e-95 296 43 5 433 3 dcuC Anaerobic C4-dicarboxylate transporter DcuC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q9KLS6 3.81e-93 292 40 5 447 3 dcuC Probable anaerobic C4-dicarboxylate transporter DcuC Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P44018 2.74e-13 73 29 9 251 5 HI_0585 Putative uncharacterized transporter HI_0585 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS13170
Feature type CDS
Gene dcuC
Product C4-dicarboxylate transporter DcuC
Location 252193 - 253563 (strand: 1)
Length 1371 (nucleotides) / 456 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000003
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3738
Orthogroup size 2
N. genomes 2

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Genomic region

Domains

PF03606 C4-dicarboxylate anaerobic carrier

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3069 Energy production and conversion (C) C C4-dicarboxylate transporter DcuC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03326 C4-dicarboxylate transporter, DcuC family - -

Protein Sequence

MLPILAVLVVIILVARFILKGYKAEPVLFIAGLALMSCTLLFGWGSILPKNLATTGITWLDPFEVMRDLFSSRAADLGLMIMALMGFAHYMDHIGANDAVVNVATKPLKNMRSPYVLLFFSFLLASILQLAIPSATGLAVLLMGTMFPIMIGLGLSPASAAGVIATSLGVAYTPTAIDAIRGAKAVDMSVVDYVLYYQGPAALATVLAVGVTHIFWQRHCDRKQGFIPEIGKSVIAHEKEKTKSVPGYYALLPMLPIIMAVGTSNLFFEGIHLDVVTIVLIAMAICMVVETLRVRNFKAVCNGFQHFLNGMGHAFSNVVGLLVAAGVFAHGIKVSGAIDHLIVMAESVGLPPFAMALVFALITLAAAIIMGSGNAPFLAFVELIPQIAHSMGASAVAMILPMQQASHMGRGMSPVSGVIIAVSSGAKLQPFDVVKRTAIPLMVGFVIHCTIIGLFY

Flanking regions ( +/- flanking 50bp)

AAAAACGTCGTGACACTGACCGCTTCCCGCTTTAAGCCGGGGGTCTGAGTATGCTCCCGATTCTGGCTGTTCTTGTCGTCATTATCCTTGTTGCCCGTTTTATCCTGAAGGGTTACAAAGCCGAGCCGGTATTGTTTATCGCCGGTCTGGCACTGATGAGCTGCACGCTGCTTTTTGGCTGGGGCTCGATTTTACCGAAAAACCTTGCCACAACCGGGATAACCTGGCTTGATCCGTTTGAAGTAATGCGTGATCTCTTCAGCAGCCGTGCCGCCGATCTTGGTCTGATGATCATGGCGCTGATGGGCTTTGCTCACTATATGGATCATATCGGTGCCAATGACGCGGTGGTCAATGTTGCCACTAAGCCGCTGAAAAACATGCGTTCGCCTTATGTACTGCTGTTTTTCTCCTTCCTGCTCGCCAGTATTCTGCAACTGGCTATCCCGTCCGCGACCGGGCTTGCCGTTCTGCTGATGGGAACCATGTTCCCGATTATGATCGGGCTGGGATTATCACCGGCATCTGCCGCCGGGGTTATCGCCACATCACTGGGTGTGGCATATACCCCGACGGCGATTGATGCAATCCGCGGGGCAAAAGCCGTGGATATGTCAGTCGTTGATTATGTGCTTTATTACCAGGGACCTGCTGCTCTCGCCACGGTTCTGGCTGTCGGGGTAACCCATATCTTCTGGCAGCGCCACTGTGACCGCAAACAGGGATTTATTCCTGAAATCGGCAAATCCGTTATTGCTCATGAGAAGGAAAAAACCAAAAGTGTGCCGGGTTATTACGCCCTGCTGCCGATGCTGCCGATTATCATGGCGGTGGGAACATCAAACCTGTTTTTTGAAGGTATTCATCTTGATGTGGTGACCATCGTTCTGATCGCGATGGCCATTTGTATGGTGGTTGAAACACTGAGGGTGCGTAATTTCAAAGCGGTCTGTAACGGATTCCAGCATTTCCTTAACGGGATGGGACATGCCTTCAGTAATGTTGTCGGGCTGCTGGTTGCCGCCGGGGTATTTGCCCATGGTATCAAAGTCAGCGGAGCGATTGATCACCTGATTGTGATGGCGGAATCCGTCGGTTTACCGCCATTTGCCATGGCGCTGGTATTTGCACTGATCACACTGGCTGCCGCTATTATTATGGGTTCAGGTAATGCGCCGTTCCTCGCCTTTGTTGAGCTTATTCCGCAAATCGCACACAGCATGGGAGCAAGTGCAGTTGCGATGATCCTGCCGATGCAGCAGGCGTCTCATATGGGTCGTGGTATGTCTCCGGTTTCCGGAGTCATCATTGCCGTGTCCAGCGGTGCAAAACTCCAGCCGTTTGATGTCGTTAAACGCACAGCCATTCCGCTGATGGTCGGGTTTGTCATTCACTGTACGATTATCGGTCTTTTCTATTGAGTATTGCGGGGCAGCCCGGCGCTGTCCCGTTTTTTGTGTGATCCGCCCCA