Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03222, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 38 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_438 | FBDBKF_00415 | 62032 | 63237 | 1 | tyrP | tyrosine transporter TyrP | Morganella morganii S1 |
1 | group_18 | FBDBKF_06965 | 57204 | 58523 | -1 | sdaC | Amino acid permease | Morganella morganii S1 |
2 | group_18 | FBDBKF_06970 | 59476 | 60795 | -1 | sdaC | Amino acid permease | Morganella morganii S1 |
3 | group_19 | FBDBKF_07880 | 104662 | 105906 | 1 | mtr | tryptophan permease | Morganella morganii S1 |
4 | group_19 | FBDBKF_11130 | 50714 | 51982 | -1 | sdaC | Amino acid permease | Morganella morganii S1 |
5 | group_19 | FBDBKF_14845 | 70429 | 71676 | 1 | mtr | tryptophan permease | Morganella morganii S1 |
6 | group_438 | EHELCC_01130 | 245631 | 246836 | -1 | tyrP | tyrosine transporter TyrP | Morganella morganii S2 |
7 | group_18 | EHELCC_04000 | 125391 | 126710 | 1 | sdaC | Amino acid permease | Morganella morganii S2 |
8 | group_18 | EHELCC_04005 | 127663 | 128982 | 1 | sdaC | Amino acid permease | Morganella morganii S2 |
9 | group_19 | EHELCC_05095 | 7486 | 8754 | 1 | sdaC | Amino acid permease | Morganella morganii S2 |
10 | group_19 | EHELCC_13710 | 78856 | 80100 | 1 | mtr | tryptophan permease | Morganella morganii S2 |
11 | group_19 | EHELCC_15650 | 100505 | 101752 | 1 | mtr | tryptophan permease | Morganella morganii S2 |
12 | group_438 | NLDBIP_02330 | 433300 | 434505 | 1 | tyrP | tyrosine transporter TyrP | Morganella morganii S4 |
13 | group_18 | NLDBIP_04000 | 125187 | 126506 | 1 | sdaC | Amino acid permease | Morganella morganii S4 |
14 | group_18 | NLDBIP_04005 | 127459 | 128778 | 1 | sdaC | Amino acid permease | Morganella morganii S4 |
15 | group_19 | NLDBIP_05415 | 48559 | 49827 | 1 | sdaC | Amino acid permease | Morganella morganii S4 |
16 | group_19 | NLDBIP_14155 | 99731 | 100975 | 1 | mtr | tryptophan permease | Morganella morganii S4 |
17 | group_19 | NLDBIP_16180 | 100505 | 101752 | 1 | mtr | tryptophan permease | Morganella morganii S4 |
18 | group_19 | LHKJJB_02295 | 26083 | 27351 | 1 | sdaC | Amino acid permease | Morganella morganii S3 |
19 | group_438 | LHKJJB_03845 | 40541 | 41746 | 1 | tyrP | tyrosine transporter TyrP | Morganella morganii S3 |
20 | group_19 | LHKJJB_08695 | 58774 | 60018 | -1 | mtr | tryptophan permease | Morganella morganii S3 |
21 | group_18 | LHKJJB_09830 | 125301 | 126620 | 1 | sdaC | Amino acid permease | Morganella morganii S3 |
22 | group_18 | LHKJJB_09835 | 127573 | 128892 | 1 | sdaC | Amino acid permease | Morganella morganii S3 |
23 | group_19 | LHKJJB_15660 | 14934 | 16181 | -1 | mtr | tryptophan permease | Morganella morganii S3 |
24 | group_438 | HKOGLL_03200 | 245836 | 247041 | -1 | tyrP | tyrosine transporter TyrP | Morganella morganii S5 |
25 | group_19 | HKOGLL_08245 | 58774 | 60018 | -1 | mtr | tryptophan permease | Morganella morganii S5 |
26 | group_18 | HKOGLL_09140 | 62160 | 63479 | -1 | sdaC | Amino acid permease | Morganella morganii S5 |
27 | group_18 | HKOGLL_09145 | 64432 | 65751 | -1 | sdaC | Amino acid permease | Morganella morganii S5 |
28 | group_19 | HKOGLL_14780 | 14146 | 15393 | -1 | mtr | tryptophan permease | Morganella morganii S5 |
29 | group_19 | HKOGLL_15675 | 49523 | 50791 | 1 | sdaC | Amino acid permease | Morganella morganii S5 |
30 | group_18 | F4V73_RS01160 | 244299 | 245618 | -1 | HAAAP family serine/threonine permease | Morganella psychrotolerans | |
31 | group_438 | F4V73_RS06395 | 1334567 | 1335712 | 1 | tyrP | tyrosine transporter TyrP | Morganella psychrotolerans |
32 | group_19 | F4V73_RS07645 | 1599899 | 1601146 | 1 | mtr | tryptophan permease | Morganella psychrotolerans |
33 | group_19 | F4V73_RS08145 | 1692461 | 1693723 | 1 | aromatic amino acid transporter | Morganella psychrotolerans | |
34 | group_19 | F4V73_RS13140 | 244486 | 245730 | -1 | mtr | tryptophan permease | Morganella psychrotolerans |
35 | group_18 | PMI_RS03305 | 731056 | 732384 | -1 | HAAAP family serine/threonine permease | Proteus mirabilis HI4320 | |
36 | group_19 | PMI_RS04105 | 917328 | 918569 | -1 | mtr | tryptophan permease | Proteus mirabilis HI4320 |
37 | group_438 | PMI_RS08530 | 1859893 | 1861044 | 1 | tyrP | tyrosine transporter TyrP | Proteus mirabilis HI4320 |