Homologs in group_19

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18 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07880 FBDBKF_07880 56.5 Morganella morganii S1 mtr tryptophan permease
FBDBKF_11130 FBDBKF_11130 42.4 Morganella morganii S1 sdaC Amino acid permease
FBDBKF_14845 FBDBKF_14845 100.0 Morganella morganii S1 mtr tryptophan permease
EHELCC_05095 EHELCC_05095 42.4 Morganella morganii S2 sdaC Amino acid permease
EHELCC_13710 EHELCC_13710 56.5 Morganella morganii S2 mtr tryptophan permease
EHELCC_15650 EHELCC_15650 100.0 Morganella morganii S2 mtr tryptophan permease
NLDBIP_05415 NLDBIP_05415 42.4 Morganella morganii S4 sdaC Amino acid permease
NLDBIP_14155 NLDBIP_14155 56.5 Morganella morganii S4 mtr tryptophan permease
NLDBIP_16180 NLDBIP_16180 100.0 Morganella morganii S4 mtr tryptophan permease
LHKJJB_02295 LHKJJB_02295 42.4 Morganella morganii S3 sdaC Amino acid permease
LHKJJB_08695 LHKJJB_08695 56.5 Morganella morganii S3 mtr tryptophan permease
HKOGLL_08245 HKOGLL_08245 56.5 Morganella morganii S5 mtr tryptophan permease
HKOGLL_14780 HKOGLL_14780 100.0 Morganella morganii S5 mtr tryptophan permease
HKOGLL_15675 HKOGLL_15675 42.4 Morganella morganii S5 sdaC Amino acid permease
F4V73_RS07645 F4V73_RS07645 90.6 Morganella psychrotolerans mtr tryptophan permease
F4V73_RS08145 F4V73_RS08145 43.1 Morganella psychrotolerans - aromatic amino acid transporter
F4V73_RS13140 F4V73_RS13140 57.0 Morganella psychrotolerans mtr tryptophan permease
PMI_RS04105 PMI_RS04105 69.7 Proteus mirabilis HI4320 mtr tryptophan permease

Distribution of the homologs in the orthogroup group_19

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_19

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P44614 9.81e-172 489 60 2 409 3 mtr Tryptophan-specific transport protein Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q02DS7 8.35e-170 484 56 1 415 1 mtr Tryptophan-specific transport protein Pseudomonas aeruginosa (strain UCBPP-PA14)
P0AAD3 1.15e-152 441 55 1 415 3 mtr Tryptophan-specific transport protein Shigella flexneri
P0AAD2 1.15e-152 441 55 1 415 1 mtr Tryptophan-specific transport protein Escherichia coli (strain K12)
P23173 3.22e-123 366 44 2 408 1 tnaB Low affinity tryptophan permease Escherichia coli (strain K12)
Q8XB33 8.75e-123 365 45 2 408 3 tnaB Low affinity tryptophan permease Escherichia coli O157:H7
Q47825 3.69e-111 335 41 3 414 3 tutB Tyrosine permease Enterobacter agglomerans
P28785 1.92e-100 308 39 3 405 2 tnaB Low affinity tryptophan permease Proteus vulgaris
P0AAD5 6.53e-72 234 34 2 403 3 tyrP Tyrosine-specific transport system Shigella flexneri
P0AAD4 6.53e-72 234 34 2 403 1 tyrP Tyrosine-specific transport system Escherichia coli (strain K12)
P44727 4.24e-58 198 33 3 385 3 tyrP-A Tyrosine-specific transport system 1 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P44747 8.96e-47 168 32 5 410 3 tyrP-B Tyrosine-specific transport system 2 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q5E5M9 3.1e-25 109 24 10 378 3 VF_1172 Glutamine transporter 2 Aliivibrio fischeri (strain ATCC 700601 / ES114)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_15660
Feature type CDS
Gene mtr
Product tryptophan permease
Location 14934 - 16181 (strand: -1)
Length 1248 (nucleotides) / 415 (amino acids)

Contig

Accession ZDB_374
Length 116739 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_19
Orthogroup size 19
N. genomes 7

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Genomic region

Domains

PF03222 Tryptophan/tyrosine permease family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0814 Amino acid transport and metabolism (E) E Amino acid permease

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03835 tryptophan-specific transport protein - -

Protein Sequence

MSSDAITQTKRPSVLGGAMIIAGTAVGAGMFSIPVMTAGVWFTGSVLLLIYTWFCMYTSGLMILEANLNYPSGSSFHTITKDLLGNGWSVINGLSIAFVLYILTYAYISAGGSMLQENLAARGLNITPAMSGIFFAAVVAVIVWISTKAVDRLCTILIGGMVIAFVMSAGGMITEVKTAVLFNTQDPEARYLPYALVALPFLLTSFGFHGNVPGLVKYYRNDAKSVVRSLLIGSLISLVIYILWQLAAQGNVPRENFKQVIAEGGNITALLSQMKAAINSDTTVQLLNAFSYMALASSFLGVSLGLFDYIADFFKFKDNGTGRLKSAVFTFVPPAILAVLYPDGFLYAIGYAGLAATIWAVIVPALMAKATRRRFPQAAYRVPGGNAMIIFIILFGLLNAVTHILSMMGLLPVYR

Flanking regions ( +/- flanking 50bp)

CCGTATCATCAAGCTAGTACACGGAGCTGAGTAACCGGAGGATTTATTTAATGAGCAGCGACGCAATAACACAAACCAAACGCCCTTCCGTCCTGGGCGGTGCCATGATTATCGCCGGTACCGCTGTCGGTGCAGGCATGTTTTCCATCCCTGTGATGACAGCGGGTGTCTGGTTTACCGGCTCCGTTCTGCTGCTGATTTACACCTGGTTTTGTATGTATACCTCCGGGCTGATGATCCTCGAGGCAAACCTCAATTATCCGTCAGGCTCCAGCTTTCACACCATTACCAAAGATCTGCTGGGTAACGGCTGGTCAGTAATTAACGGGCTCTCCATCGCCTTTGTACTCTATATTCTGACTTATGCATATATCTCGGCCGGTGGTTCGATGTTACAGGAGAACCTGGCAGCACGCGGACTCAATATCACCCCGGCGATGAGCGGGATTTTCTTTGCTGCCGTGGTGGCCGTGATTGTCTGGATTTCCACCAAAGCCGTTGACCGTCTGTGCACCATTTTAATCGGCGGGATGGTGATTGCATTTGTGATGTCCGCAGGCGGCATGATCACAGAAGTGAAAACCGCGGTATTATTTAACACACAGGACCCGGAAGCCCGCTATCTGCCGTATGCACTGGTGGCGCTGCCGTTCCTGCTGACCTCATTCGGCTTCCACGGTAACGTGCCGGGTCTGGTGAAATATTACCGTAATGACGCGAAATCCGTCGTGCGCAGTCTGCTTATCGGCTCCCTGATTTCACTGGTGATCTATATCTTATGGCAGCTGGCCGCCCAGGGTAACGTCCCGCGTGAAAACTTTAAGCAGGTTATCGCGGAAGGCGGCAATATCACCGCGCTGTTAAGCCAGATGAAAGCCGCTATCAACAGTGACACCACGGTGCAGTTACTCAATGCCTTCAGTTATATGGCGCTGGCCAGTTCATTCCTGGGGGTGTCGCTGGGACTGTTTGACTACATCGCTGACTTCTTTAAGTTTAAGGATAACGGCACCGGACGCCTGAAATCCGCCGTGTTTACCTTTGTTCCGCCGGCGATTCTGGCAGTGCTGTACCCGGACGGGTTCCTGTATGCCATCGGTTATGCCGGGCTGGCAGCAACCATCTGGGCGGTGATTGTCCCGGCGCTGATGGCAAAAGCCACCCGCCGCCGCTTCCCGCAGGCAGCCTACCGTGTGCCGGGCGGCAATGCGATGATCATCTTTATCATTCTGTTCGGGCTTCTCAACGCCGTCACACATATTTTATCCATGATGGGTCTCCTGCCGGTTTACCGCTGATTTCACCCGGATATCACACCCGCTGCATTTCTGCAGGCGGGTGTGATAAT