Orthogroup:group_13


Homologs in group_13

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19 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_07880 FBDBKF_07880 Morganella morganii S1 mtr tryptophan permease
FBDBKF_11130 FBDBKF_11130 Morganella morganii S1 sdaC Amino acid permease
FBDBKF_14845 FBDBKF_14845 Morganella morganii S1 mtr tryptophan permease
EHELCC_05095 EHELCC_05095 Morganella morganii S2 sdaC Amino acid permease
EHELCC_13710 EHELCC_13710 Morganella morganii S2 mtr tryptophan permease
EHELCC_15650 EHELCC_15650 Morganella morganii S2 mtr tryptophan permease
NLDBIP_05415 NLDBIP_05415 Morganella morganii S4 sdaC Amino acid permease
NLDBIP_14155 NLDBIP_14155 Morganella morganii S4 mtr tryptophan permease
NLDBIP_16180 NLDBIP_16180 Morganella morganii S4 mtr tryptophan permease
LHKJJB_02295 LHKJJB_02295 Morganella morganii S3 sdaC Amino acid permease
LHKJJB_08695 LHKJJB_08695 Morganella morganii S3 mtr tryptophan permease
LHKJJB_15660 LHKJJB_15660 Morganella morganii S3 mtr tryptophan permease
HKOGLL_08245 HKOGLL_08245 Morganella morganii S5 mtr tryptophan permease
HKOGLL_14780 HKOGLL_14780 Morganella morganii S5 mtr tryptophan permease
HKOGLL_15675 HKOGLL_15675 Morganella morganii S5 sdaC Amino acid permease
F4V73_RS07645 F4V73_RS07645 Morganella psychrotolerans mtr tryptophan permease
F4V73_RS08145 F4V73_RS08145 Morganella psychrotolerans - aromatic amino acid transporter
F4V73_RS13140 F4V73_RS13140 Morganella psychrotolerans mtr tryptophan permease
PMI_RS04105 PMI_RS04105 Proteus mirabilis HI4320 mtr tryptophan permease

Distribution of group_13 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_13 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_13

Orthogroup content: 19 members

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This page summarizes the annotation of all members of the orthologous group group_13.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 mtr 13
2 sdaC 5
3 - 1

Product

# Product Occurence
1 tryptophan permease 13
2 Amino acid permease 5
3 aromatic amino acid transporter 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0814 19 E Amino acid transport and metabolism (E) Amino acid permease

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03318 5 tyrosine permease - -
K03835 13 tryptophan-specific transport protein - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF03222 19 Tryptophan/tyrosine permease family

Annotations of the 13 SwissProt hits

Annotation Number of occurrences
Glutamine transporter 2 1
Low affinity tryptophan permease 3
Tryptophan-specific transport protein 4
Tyrosine permease 1
Tyrosine-specific transport system 2
Tyrosine-specific transport system 1 1
Tyrosine-specific transport system 2 1

Protein length

Min length 413
Max length 422
Mean length (sd) 416.7 (3.5)
Median length 415.0

Protein length distribution