Orthogroup:group_12


Homologs in group_12

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19 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_06965 FBDBKF_06965 Morganella morganii S1 sdaC Amino acid permease
FBDBKF_06970 FBDBKF_06970 Morganella morganii S1 sdaC Amino acid permease
FBDBKF_15750 FBDBKF_15750 Morganella morganii S1 tdcC threonine/serine transporter TdcC
EHELCC_04000 EHELCC_04000 Morganella morganii S2 sdaC Amino acid permease
EHELCC_04005 EHELCC_04005 Morganella morganii S2 sdaC Amino acid permease
EHELCC_17665 EHELCC_17665 Morganella morganii S2 tdcC threonine/serine transporter TdcC
NLDBIP_04000 NLDBIP_04000 Morganella morganii S4 sdaC Amino acid permease
NLDBIP_04005 NLDBIP_04005 Morganella morganii S4 sdaC Amino acid permease
NLDBIP_19335 NLDBIP_19335 Morganella morganii S4 tdcC threonine/serine transporter TdcC
LHKJJB_09830 LHKJJB_09830 Morganella morganii S3 sdaC Amino acid permease
LHKJJB_09835 LHKJJB_09835 Morganella morganii S3 sdaC Amino acid permease
LHKJJB_18105 LHKJJB_18105 Morganella morganii S3 tdcC threonine/serine transporter TdcC
HKOGLL_09140 HKOGLL_09140 Morganella morganii S5 sdaC Amino acid permease
HKOGLL_09145 HKOGLL_09145 Morganella morganii S5 sdaC Amino acid permease
HKOGLL_18975 HKOGLL_18975 Morganella morganii S5 tdcC threonine/serine transporter TdcC
F4V73_RS01160 F4V73_RS01160 Morganella psychrotolerans - HAAAP family serine/threonine permease
F4V73_RS01165 F4V73_RS01165 Morganella psychrotolerans - HAAAP family serine/threonine permease
F4V73_RS07940 F4V73_RS07940 Morganella psychrotolerans tdcC threonine/serine transporter TdcC
PMI_RS03305 PMI_RS03305 Proteus mirabilis HI4320 - HAAAP family serine/threonine permease

Distribution of group_12 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_12 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_12

Orthogroup content: 19 members

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This page summarizes the annotation of all members of the orthologous group group_12.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 sdaC 10
2 tdcC 6
3 - 3

Product

# Product Occurence
1 Amino acid permease 10
2 threonine/serine transporter TdcC 6
3 HAAAP family serine/threonine permease 3

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0814 19 E Amino acid transport and metabolism (E) Amino acid permease

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03837 13 serine transporter - -
K03838 6 threonine transporter - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01490 5 Transmembrane amino acid transporter protein
PF03222 12 Tryptophan/tyrosine permease family

Annotations of the 59 SwissProt hits

Annotation Number of occurrences
Inner membrane transport protein YhjV 1
Inner membrane transport protein YqeG 3
Probable serine transporter 1
Serine transporter 1
Serine transporter SdaC 4
Threonine/serine transporter TdcC 49

Protein length

Min length 439
Max length 442
Mean length (sd) 440.1 (1.5)
Median length 439.0

Protein length distribution