PF03180


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03180, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 22 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03180
Description NlpA lipoprotein

Occurence in the database

PF03180 is associated with 22 different proteins (see tab "Protein list" and "Profile")
The 22 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_5 FBDBKF_05895 2766 3581 1 metQ ABC-type metal ion transport system, periplasmic component/surface antigen Morganella morganii S1
1 group_5 FBDBKF_09265 84704 85507 -1 metQ ABC-type metal ion transport system, periplasmic component/surface antigen Morganella morganii S1
2 group_5 FBDBKF_19935 7054 7869 1 nlpA lipoprotein NlpA Morganella morganii S1
3 group_5 EHELCC_07680 7553 8368 -1 nlpA lipoprotein NlpA Morganella morganii S2
4 group_5 EHELCC_08940 3338 4153 1 metQ ABC-type metal ion transport system, periplasmic component/surface antigen Morganella morganii S2
5 group_5 EHELCC_10145 60597 61400 1 metQ ABC-type metal ion transport system, periplasmic component/surface antigen Morganella morganii S2
6 group_5 NLDBIP_08005 7553 8368 -1 nlpA lipoprotein NlpA Morganella morganii S4
7 group_5 NLDBIP_09320 3338 4153 1 metQ ABC-type metal ion transport system, periplasmic component/surface antigen Morganella morganii S4
8 group_5 NLDBIP_10490 38868 39671 1 metQ ABC-type metal ion transport system, periplasmic component/surface antigen Morganella morganii S4
9 group_5 LHKJJB_06260 248791 249606 1 nlpA lipoprotein NlpA Morganella morganii S3
10 group_5 LHKJJB_08435 213085 213900 -1 metQ ABC-type metal ion transport system, periplasmic component/surface antigen Morganella morganii S3
11 group_5 LHKJJB_10865 151857 152660 -1 metQ ABC-type metal ion transport system, periplasmic component/surface antigen Morganella morganii S3
12 group_5 HKOGLL_07985 213085 213900 -1 metQ ABC-type metal ion transport system, periplasmic component/surface antigen Morganella morganii S5
13 group_5 HKOGLL_13925 85158 85961 -1 metQ ABC-type metal ion transport system, periplasmic component/surface antigen Morganella morganii S5
14 group_5 HKOGLL_19115 7060 7875 1 nlpA lipoprotein NlpA Morganella morganii S5
15 group_5 F4V73_RS02430 513899 514714 -1 nlpA lipoprotein NlpA Morganella psychrotolerans
16 group_5 F4V73_RS10700 269956 270759 1 MetQ/NlpA family lipoprotein Morganella psychrotolerans
17 group_5 F4V73_RS16000 209874 210689 -1 MetQ/NlpA family lipoprotein Morganella psychrotolerans
18 group_5 PMI_RS06020 1319484 1320284 1 MetQ/NlpA family lipoprotein Proteus mirabilis HI4320
19 group_5 PMI_RS06360 1392662 1393477 1 MetQ/NlpA family lipoprotein Proteus mirabilis HI4320
20 group_5 PMI_RS11165 2456987 2457802 1 MetQ/NlpA family lipoprotein Proteus mirabilis HI4320
21 group_5 PMI_RS14940 3315888 3316691 -1 MetQ/NlpA family ABC transporter substrate-binding protein Proteus mirabilis HI4320