PF01292
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01292, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 33 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link |
PF01292 |
Description |
Prokaryotic cytochrome b561 |
Occurence in the database
PF01292 is associated with 33 different proteins (see tab "Protein list" and "Profile") |
The 33 proteins are classified into 5 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_3170 |
FBDBKF_00575 |
94997 |
95587 |
1 |
|
Cytochrome b561 bacterial/Ni-hydrogenase domain-containing protein |
Morganella morganii S1 |
1 |
group_890 |
FBDBKF_04620 |
123340 |
123891 |
-1 |
cybB |
Cytochrome b561 |
Morganella morganii S1 |
2 |
group_2676 |
FBDBKF_04940 |
194137 |
194670 |
1 |
cybB |
cytochrome b561 |
Morganella morganii S1 |
3 |
group_70 |
FBDBKF_08050 |
146285 |
146941 |
-1 |
fdnI |
formate dehydrogenase-N subunit gamma |
Morganella morganii S1 |
4 |
group_70 |
FBDBKF_16130 |
16659 |
17309 |
1 |
fdoI |
formate dehydrogenase cytochrome b556 subunit |
Morganella morganii S1 |
5 |
group_3170 |
EHELCC_00970 |
213281 |
213871 |
-1 |
|
Cytochrome b561 bacterial/Ni-hydrogenase domain-containing protein |
Morganella morganii S2 |
6 |
group_890 |
EHELCC_05910 |
182797 |
183348 |
-1 |
cybB |
Cytochrome b561 |
Morganella morganii S2 |
7 |
group_2676 |
EHELCC_06230 |
253594 |
254127 |
1 |
cybB |
cytochrome b561 |
Morganella morganii S2 |
8 |
group_70 |
EHELCC_13880 |
120479 |
121135 |
-1 |
fdnI |
formate dehydrogenase-N subunit gamma |
Morganella morganii S2 |
9 |
group_70 |
EHELCC_16165 |
16659 |
17309 |
1 |
fdoI |
formate dehydrogenase cytochrome b556 subunit |
Morganella morganii S2 |
10 |
group_3170 |
NLDBIP_02490 |
466265 |
466855 |
1 |
|
Cytochrome b561 bacterial/Ni-hydrogenase domain-containing protein |
Morganella morganii S4 |
11 |
group_890 |
NLDBIP_06230 |
223862 |
224413 |
-1 |
cybB |
Cytochrome b561 |
Morganella morganii S4 |
12 |
group_2676 |
NLDBIP_06550 |
294659 |
295192 |
1 |
cybB |
cytochrome b561 |
Morganella morganii S4 |
13 |
group_70 |
NLDBIP_14325 |
141354 |
142010 |
-1 |
fdnI |
formate dehydrogenase-N subunit gamma |
Morganella morganii S4 |
14 |
group_70 |
NLDBIP_17175 |
44861 |
45511 |
-1 |
fdoI |
formate dehydrogenase cytochrome b556 subunit |
Morganella morganii S4 |
15 |
group_890 |
LHKJJB_03110 |
201386 |
201937 |
-1 |
cybB |
Cytochrome b561 |
Morganella morganii S3 |
16 |
group_2676 |
LHKJJB_03430 |
272183 |
272716 |
1 |
cybB |
cytochrome b561 |
Morganella morganii S3 |
17 |
group_3170 |
LHKJJB_04005 |
73506 |
74096 |
1 |
|
Cytochrome b561 bacterial/Ni-hydrogenase domain-containing protein |
Morganella morganii S3 |
18 |
group_70 |
LHKJJB_08525 |
17739 |
18395 |
1 |
fdnI |
formate dehydrogenase-N subunit gamma |
Morganella morganii S3 |
19 |
group_70 |
LHKJJB_17095 |
47963 |
48613 |
-1 |
fdoI |
formate dehydrogenase cytochrome b556 subunit |
Morganella morganii S3 |
20 |
group_3170 |
HKOGLL_03040 |
213486 |
214076 |
-1 |
|
Cytochrome b561 bacterial/Ni-hydrogenase domain-containing protein |
Morganella morganii S5 |
21 |
group_890 |
HKOGLL_06585 |
123250 |
123801 |
-1 |
cybB |
Cytochrome b561 |
Morganella morganii S5 |
22 |
group_2676 |
HKOGLL_06905 |
194047 |
194580 |
1 |
cybB |
cytochrome b561 |
Morganella morganii S5 |
23 |
group_70 |
HKOGLL_08075 |
17739 |
18395 |
1 |
fdnI |
formate dehydrogenase-N subunit gamma |
Morganella morganii S5 |
24 |
group_70 |
HKOGLL_16745 |
16659 |
17309 |
1 |
fdoI |
formate dehydrogenase cytochrome b556 subunit |
Morganella morganii S5 |
25 |
group_890 |
F4V73_RS09070 |
1896917 |
1897468 |
-1 |
|
cytochrome b |
Morganella psychrotolerans |
26 |
group_70 |
F4V73_RS12945 |
198915 |
199574 |
1 |
fdnI |
formate dehydrogenase-N subunit gamma |
Morganella psychrotolerans |
27 |
group_2676 |
F4V73_RS16080 |
19012 |
19545 |
1 |
cybB |
cytochrome b561 |
Morganella psychrotolerans |
28 |
group_70 |
F4V73_RS17485 |
128891 |
129541 |
-1 |
fdoI |
formate dehydrogenase cytochrome b556 subunit |
Morganella psychrotolerans |
29 |
group_3873 |
PMI_RS00320 |
93676 |
94473 |
-1 |
|
thiosulfate reductase cytochrome B subunit |
Proteus mirabilis HI4320 |
30 |
group_3873 |
PMI_RS08910 |
1950280 |
1951047 |
1 |
|
thiosulfate reductase cytochrome B subunit |
Proteus mirabilis HI4320 |
31 |
group_890 |
PMI_RS10445 |
2294592 |
2295146 |
-1 |
|
cytochrome b |
Proteus mirabilis HI4320 |
32 |
group_70 |
PMI_RS15385 |
3418420 |
3419076 |
-1 |
fdoI |
formate dehydrogenase cytochrome b556 subunit |
Proteus mirabilis HI4320 |