Homologs in group_70

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12 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08050 FBDBKF_08050 92.2 Morganella morganii S1 fdnI formate dehydrogenase-N subunit gamma
FBDBKF_16130 FBDBKF_16130 50.9 Morganella morganii S1 fdoI formate dehydrogenase cytochrome b556 subunit
EHELCC_13880 EHELCC_13880 92.2 Morganella morganii S2 fdnI formate dehydrogenase-N subunit gamma
EHELCC_16165 EHELCC_16165 50.9 Morganella morganii S2 fdoI formate dehydrogenase cytochrome b556 subunit
NLDBIP_14325 NLDBIP_14325 92.2 Morganella morganii S4 fdnI formate dehydrogenase-N subunit gamma
NLDBIP_17175 NLDBIP_17175 50.9 Morganella morganii S4 fdoI formate dehydrogenase cytochrome b556 subunit
LHKJJB_08525 LHKJJB_08525 92.2 Morganella morganii S3 fdnI formate dehydrogenase-N subunit gamma
LHKJJB_17095 LHKJJB_17095 50.9 Morganella morganii S3 fdoI formate dehydrogenase cytochrome b556 subunit
HKOGLL_08075 HKOGLL_08075 92.2 Morganella morganii S5 fdnI formate dehydrogenase-N subunit gamma
HKOGLL_16745 HKOGLL_16745 50.9 Morganella morganii S5 fdoI formate dehydrogenase cytochrome b556 subunit
F4V73_RS17485 F4V73_RS17485 51.9 Morganella psychrotolerans fdoI formate dehydrogenase cytochrome b556 subunit
PMI_RS15385 PMI_RS15385 50.2 Proteus mirabilis HI4320 fdoI formate dehydrogenase cytochrome b556 subunit

Distribution of the homologs in the orthogroup group_70

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_70

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AEK9 5.05e-124 352 81 0 213 3 fdnI Formate dehydrogenase, nitrate-inducible, cytochrome b556(Fdn) subunit Shigella flexneri
P0AEK7 5.05e-124 352 81 0 213 1 fdnI Formate dehydrogenase, nitrate-inducible, cytochrome b556(Fdn) subunit Escherichia coli (strain K12)
P0AEK8 5.05e-124 352 81 0 213 3 fdnI Formate dehydrogenase, nitrate-inducible, cytochrome b556(Fdn) subunit Escherichia coli O157:H7
P44451 4.68e-82 247 52 0 211 3 fdxI Formate dehydrogenase, cytochrome b556 subunit Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0AEL0 8.01e-67 207 46 1 204 1 fdoI Formate dehydrogenase, cytochrome b556(fdo) subunit Escherichia coli (strain K12)
P0AEL1 8.01e-67 207 46 1 204 3 fdoI Formate dehydrogenase, cytochrome b556(fdo) subunit Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AEL2 8.01e-67 207 46 1 204 3 fdoI Formate dehydrogenase, cytochrome b556(fdo) subunit Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS12945
Feature type CDS
Gene fdnI
Product formate dehydrogenase-N subunit gamma
Location 198915 - 199574 (strand: 1)
Length 660 (nucleotides) / 219 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_70
Orthogroup size 13
N. genomes 7

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Genomic region

Domains

PF01292 Prokaryotic cytochrome b561

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2864 Energy production and conversion (C) C Cytochrome b subunit of formate dehydrogenase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K08350 formate dehydrogenase-N, gamma subunit Two-component system -

Protein Sequence

MSKKKSKMILRTKFVDRACHWTVVICFFMVSLSGIALFFPTLQWLTETFGTPQMGRILHPFFGVLIFFVLMFMFFRFVKHNIPDREDISWVKNIVEVLKGNEHNVARVGKYNAGQKMMFWSIMSMIFVLLATGIVIWRPYFAHYFPMWMIRWSLLIHAAAAIILIHAILIHMYMAFWVKGSIKGMVEGKVSRRWAKKHHPRWYEEVEAKEAAEDAKQQK

Flanking regions ( +/- flanking 50bp)

AGGGCCGAATAAAGAAGTGAGCGATGAAGAAGAAGATGAGGAAAACCATCATGAGTAAGAAAAAAAGCAAAATGATCCTGCGCACAAAGTTTGTTGATCGTGCCTGTCACTGGACCGTGGTTATCTGCTTTTTTATGGTTTCCTTATCCGGTATTGCTTTGTTCTTCCCGACACTGCAATGGCTGACTGAGACGTTCGGGACACCACAGATGGGGCGTATTCTGCACCCGTTCTTTGGTGTACTTATTTTCTTCGTGCTGATGTTTATGTTTTTCCGCTTCGTCAAACACAATATTCCTGACCGCGAAGATATCTCGTGGGTTAAAAATATTGTGGAAGTGCTGAAAGGCAATGAACACAATGTGGCACGGGTCGGTAAATACAACGCCGGACAAAAAATGATGTTCTGGAGCATTATGAGCATGATTTTTGTGCTGCTTGCCACCGGTATTGTCATCTGGCGTCCGTACTTCGCGCACTACTTCCCGATGTGGATGATCCGCTGGAGCCTGCTGATTCATGCGGCTGCCGCTATCATTCTGATCCACGCCATCCTGATCCATATGTATATGGCATTCTGGGTGAAAGGATCGATTAAAGGAATGGTTGAAGGCAAAGTCAGCCGCCGCTGGGCGAAGAAACATCACCCGCGCTGGTATGAAGAAGTCGAAGCTAAAGAAGCCGCTGAAGACGCAAAACAGCAGAAGTAAGCTGTTGGAGCTGTAAATGTGAACTGCGCCGCAAACGTTCAAAACAACGG