Orthogroup:group_61


Homologs in group_61

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13 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_01330 FBDBKF_01330 Morganella morganii S1 icmH type IVB secretion system protein IcmH/DotU
EHELCC_00215 EHELCC_00215 Morganella morganii S2 icmH type IVB secretion system protein IcmH/DotU
NLDBIP_03245 NLDBIP_03245 Morganella morganii S4 icmH type IVB secretion system protein IcmH/DotU
LHKJJB_04760 LHKJJB_04760 Morganella morganii S3 icmH type IVB secretion system protein IcmH/DotU
HKOGLL_02285 HKOGLL_02285 Morganella morganii S5 icmH type IVB secretion system protein IcmH/DotU
F4V73_RS00030 F4V73_RS00030 Morganella psychrotolerans icmH type IVB secretion system protein IcmH/DotU
F4V73_RS02340 F4V73_RS02340 Morganella psychrotolerans icmH type IVB secretion system protein IcmH/DotU
F4V73_RS06975 F4V73_RS06975 Morganella psychrotolerans icmH type IVB secretion system protein IcmH/DotU
F4V73_RS09340 F4V73_RS09340 Morganella psychrotolerans tssL type VI secretion system protein TssL, long form
F4V73_RS09425 F4V73_RS09425 Morganella psychrotolerans - OmpA family protein
F4V73_RS16850 F4V73_RS16850 Morganella psychrotolerans - OmpA family protein
F4V73_RS16855 F4V73_RS16855 Morganella psychrotolerans tssL type VI secretion system protein TssL, short form
PMI_RS03645 PMI_RS03645 Proteus mirabilis HI4320 icmH type IVB secretion system protein IcmH/DotU

Distribution of group_61 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_61 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_61

Orthogroup content: 13 members

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This page summarizes the annotation of all members of the orthologous group group_61.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 icmH 9
2 tssL 2
3 - 2

Product

# Product Occurence
1 type IVB secretion system protein IcmH/DotU 9
2 type VI secretion system protein TssL, long form 1
3 OmpA family protein 2
4 type VI secretion system protein TssL, short form 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2885 2 M Cell wall/membrane/envelope biogenesis (M) Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins
COG3455 11 U Intracellular trafficking, secretion, and vesicular transport (U) Type VI protein secretion system component TssL/VasF/DotU

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03286 1 OmpA-OmpF porin, OOP family - -
K11892 11 type VI secretion system protein ImpK Bacterial secretion system -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00691 4 OmpA family
PF09850 11 Type VI secretion system protein DotU

Annotations of the 64 SwissProt hits

Annotation Number of occurrences
Chemotaxis protein LafU 1
Motility protein B 5
Outer membrane porin F 3
Outer membrane protein 1
Outer membrane protein A 15
Outer membrane protein A (Fragment) 5
Outer membrane protein Omp38 3
Outer membrane protein P5 3
Outer membrane protein Tpn50 1
Outer-membrane lipoprotein YfiB 1
Peptidoglycan-associated lipoprotein 13
Peptidoglycan-binding protein ArfA 4
Photosystem I P700 chlorophyll a apoprotein A2 1
Probable lipoprotein YiaD 1
Putative flagellar export/assembly protein LafU 1
Putative lipoprotein YfiB 1
Putative truncated flagellar export/assembly protein LafU 1
Sodium-type flagellar protein MotY 2
Uncharacterized 24.6 kDa protein in ccpA 3'region 1
Uncharacterized protein YtxE 1

Protein length

Min length 222
Max length 572
Mean length (sd) 337.6 (133.2)
Median length 264.0

Protein length distribution