Homologs in group_2676

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04940 FBDBKF_04940 88.7 Morganella morganii S1 cybB cytochrome b561
EHELCC_06230 EHELCC_06230 88.7 Morganella morganii S2 cybB cytochrome b561
NLDBIP_06550 NLDBIP_06550 88.7 Morganella morganii S4 cybB cytochrome b561
LHKJJB_03430 LHKJJB_03430 88.7 Morganella morganii S3 cybB cytochrome b561
HKOGLL_06905 HKOGLL_06905 88.7 Morganella morganii S5 cybB cytochrome b561

Distribution of the homologs in the orthogroup group_2676

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2676

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9X6B2 1.93e-48 158 47 0 173 3 cybB Probable superoxide oxidase CybB Yersinia pestis
P0ABE6 6.2e-41 139 53 0 173 3 cybB Superoxide oxidase CybB Shigella flexneri
P0ABE5 6.2e-41 139 53 0 173 1 cybB Superoxide oxidase CybB Escherichia coli (strain K12)
P76345 9.69e-40 135 40 1 175 1 yodB Cytochrome b561 homolog 1 Escherichia coli (strain K12)
P75925 3.28e-09 57 24 2 177 1 yceJ Cytochrome b561 homolog 2 Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS16080
Feature type CDS
Gene cybB
Product cytochrome b561
Location 19012 - 19545 (strand: 1)
Length 534 (nucleotides) / 177 (amino acids)

Contig

Accession term accessions NZ_VXKB01000006 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 212134 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2676
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF01292 Prokaryotic cytochrome b561

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3038 Energy production and conversion (C) C Cytochrome b561

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12262 superoxide oxidase [EC:1.10.3.17] - -

Protein Sequence

MTTKKFAPVQIALHWFIFLLVILVYTSALLRDTADEPLRSILSMLHYSSGILVGILMIVRLAVRIKYPAPAIIPKPSPMITGLSHLAHLVIFVVFILLPVLGFSIKYLNGYDWSLFGIPMPVSATPDEDRAYEIQNIHEIIANTGYFIIGLHAAAALAHHYFWKDNTLLRMMPRKRH

Flanking regions ( +/- flanking 50bp)

TACCCTTATTCATTAAATTATCCGTTATCTGTATAAAAGAGTCACGAAAAATGACAACCAAAAAATTTGCACCTGTACAAATAGCCCTGCACTGGTTTATTTTCCTGCTTGTGATTCTTGTTTATACCAGCGCTCTGTTACGGGATACAGCGGACGAACCGCTGAGAAGTATTTTATCCATGCTGCATTACAGCAGCGGCATACTGGTCGGTATATTAATGATTGTCCGGCTGGCAGTCAGAATAAAATACCCTGCGCCTGCCATTATACCCAAGCCCTCACCGATGATAACCGGATTATCCCATCTGGCACATCTGGTCATATTTGTGGTATTTATTCTCTTACCGGTGCTCGGTTTCAGTATTAAATACCTGAACGGTTATGATTGGTCATTATTCGGTATCCCCATGCCGGTATCCGCAACACCGGATGAAGACCGCGCGTATGAAATACAGAATATTCATGAAATTATCGCTAATACCGGTTATTTCATTATCGGCCTGCATGCCGCCGCCGCCCTGGCGCATCACTATTTCTGGAAAGATAATACGCTGCTGCGCATGATGCCCCGCAAGCGGCACTGATTATTAAAGAGGGGAGCGTTCCGGCTCCCCTCTTTATTTGTAATTCACTG