Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00999, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 27 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link | PF00999 |
---|---|
Description | Sodium/hydrogen exchanger family |
Occurence in the database
PF00999 is associated with 27 different proteins (see tab "Protein list" and "Profile") |
The 27 proteins are classified into 4 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_2714 | FBDBKF_06880 | 41647 | 43284 | 1 | nhaP | Na+/H+ antiporter | Morganella morganii S1 |
1 | group_1691 | FBDBKF_11790 | 7878 | 9731 | -1 | kefB | glutathione-regulated potassium-efflux system protein KefB | Morganella morganii S1 |
2 | group_2139 | FBDBKF_16050 | 64277 | 66073 | -1 | ybaL | YbaL family putative K(+) efflux transporter | Morganella morganii S1 |
3 | group_2223 | FBDBKF_16990 | 26647 | 28296 | -1 | nhaP | Na+/H+ antiporter | Morganella morganii S1 |
4 | group_2714 | EHELCC_04090 | 142902 | 144539 | -1 | nhaP | Na+/H+ antiporter | Morganella morganii S2 |
5 | group_1691 | EHELCC_14515 | 124974 | 126827 | 1 | kefB | glutathione-regulated potassium-efflux system protein KefB | Morganella morganii S2 |
6 | group_2223 | EHELCC_16600 | 40214 | 41863 | 1 | nhaP | Na+/H+ antiporter | Morganella morganii S2 |
7 | group_2139 | EHELCC_18655 | 21711 | 23507 | -1 | ybaL | YbaL family putative K(+) efflux transporter | Morganella morganii S2 |
8 | group_2714 | NLDBIP_04090 | 142698 | 144335 | -1 | nhaP | Na+/H+ antiporter | Morganella morganii S4 |
9 | group_1691 | NLDBIP_15610 | 128911 | 130764 | 1 | kefB | glutathione-regulated potassium-efflux system protein KefB | Morganella morganii S4 |
10 | group_2223 | NLDBIP_16810 | 40214 | 41863 | 1 | nhaP | Na+/H+ antiporter | Morganella morganii S4 |
11 | group_2139 | NLDBIP_17485 | 51716 | 53512 | -1 | ybaL | YbaL family putative K(+) efflux transporter | Morganella morganii S4 |
12 | group_2714 | LHKJJB_09920 | 142812 | 144449 | -1 | nhaP | Na+/H+ antiporter | Morganella morganii S3 |
13 | group_1691 | LHKJJB_15000 | 7878 | 9731 | -1 | kefB | glutathione-regulated potassium-efflux system protein KefB | Morganella morganii S3 |
14 | group_2223 | LHKJJB_16660 | 26647 | 28296 | -1 | nhaP | Na+/H+ antiporter | Morganella morganii S3 |
15 | group_2139 | LHKJJB_17175 | 2676 | 4472 | 1 | ybaL | YbaL family putative K(+) efflux transporter | Morganella morganii S3 |
16 | group_2714 | HKOGLL_09055 | 46603 | 48240 | 1 | nhaP | Na+/H+ antiporter | Morganella morganii S5 |
17 | group_2139 | HKOGLL_17220 | 51716 | 53512 | -1 | ybaL | YbaL family putative K(+) efflux transporter | Morganella morganii S5 |
18 | group_2223 | HKOGLL_17625 | 26647 | 28296 | -1 | nhaP | Na+/H+ antiporter | Morganella morganii S5 |
19 | group_1691 | HKOGLL_19285 | 3620 | 5473 | 1 | kefB | glutathione-regulated potassium-efflux system protein KefB | Morganella morganii S5 |
20 | group_2714 | F4V73_RS12595 | 114470 | 116107 | 1 | Na+/H+ antiporter | Morganella psychrotolerans | |
21 | group_1691 | F4V73_RS14865 | 208494 | 210332 | 1 | kefB | glutathione-regulated potassium-efflux system protein KefB | Morganella psychrotolerans |
22 | group_2139 | F4V73_RS16220 | 54423 | 56243 | 1 | ybaL | YbaL family putative K(+) efflux transporter | Morganella psychrotolerans |
23 | group_2223 | F4V73_RS18450 | 24880 | 26529 | -1 | Na+/H+ antiporter | Morganella psychrotolerans | |
24 | group_2139 | PMI_RS10745 | 2364104 | 2365864 | 1 | ybaL | YbaL family putative K(+) efflux transporter | Proteus mirabilis HI4320 |
25 | group_1691 | PMI_RS13855 | 3076116 | 3077978 | -1 | kefB | glutathione-regulated potassium-efflux system protein KefB | Proteus mirabilis HI4320 |
26 | group_2223 | PMI_RS17525 | 3846850 | 3848499 | 1 | Na+/H+ antiporter | Proteus mirabilis HI4320 |