Help to interpret the results
Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF00730
Protein list: lists the 21 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.
Description
| External link | PF00730 |
|---|---|
| Description | HhH-GPD superfamily base excision DNA repair protein |
Occurence in the database
| PF00730 is associated with 21 different proteins |
| The 21 proteins are classified into 3 different orthogroup(s) |
| Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism | |
|---|---|---|---|---|---|---|---|---|
| 0 | group_998 | FBDBKF_05055 | 16994 | 17635 | 1 | nth | endonuclease III | Morganella morganii S1 |
| 1 | group_1659 | FBDBKF_10665 | 100380 | 101291 | -1 | alkA | 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase | Morganella morganii S1 |
| 2 | group_2029 | FBDBKF_14995 | 10765 | 11802 | -1 | mutY | A/G-specific adenine glycosylase | Morganella morganii S1 |
| 3 | group_2029 | EHELCC_11250 | 73104 | 74141 | 1 | mutY | A/G-specific adenine glycosylase | Morganella morganii S2 |
| 4 | group_998 | EHELCC_12535 | 163859 | 164500 | -1 | nth | endonuclease III | Morganella morganii S2 |
| 5 | group_1659 | EHELCC_15000 | 100370 | 101281 | -1 | alkA | 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase | Morganella morganii S2 |
| 6 | group_2029 | NLDBIP_11595 | 73104 | 74141 | 1 | mutY | A/G-specific adenine glycosylase | Morganella morganii S4 |
| 7 | group_998 | NLDBIP_12875 | 163814 | 164455 | -1 | nth | endonuclease III | Morganella morganii S4 |
| 8 | group_1659 | NLDBIP_14830 | 100370 | 101281 | -1 | alkA | 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase | Morganella morganii S4 |
| 9 | group_2029 | LHKJJB_11455 | 73104 | 74141 | 1 | mutY | A/G-specific adenine glycosylase | Morganella morganii S3 |
| 10 | group_998 | LHKJJB_12735 | 163859 | 164500 | -1 | nth | endonuclease III | Morganella morganii S3 |
| 11 | group_1659 | LHKJJB_14515 | 40445 | 41356 | 1 | alkA | 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase | Morganella morganii S3 |
| 12 | group_2029 | HKOGLL_10065 | 73104 | 74141 | 1 | mutY | A/G-specific adenine glycosylase | Morganella morganii S5 |
| 13 | group_998 | HKOGLL_11350 | 163859 | 164500 | -1 | nth | endonuclease III | Morganella morganii S5 |
| 14 | group_1659 | HKOGLL_13135 | 40445 | 41356 | 1 | alkA | 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase | Morganella morganii S5 |
| 15 | group_998 | F4V73_RS05495 | 1168377 | 1169018 | 1 | nth | endonuclease III | Morganella psychrotolerans |
| 16 | group_2029 | F4V73_RS12455 | 73940 | 74977 | 1 | mutY | A/G-specific adenine glycosylase | Morganella psychrotolerans |
| 17 | group_1659 | F4V73_RS14375 | 103365 | 104273 | -1 | DNA-3-methyladenine glycosylase 2 | Morganella psychrotolerans | |
| 18 | group_2029 | PMI_RS01555 | 377683 | 378723 | -1 | mutY | A/G-specific adenine glycosylase | Proteus mirabilis HI4320 |
| 19 | group_1659 | PMI_RS05980 | 1312164 | 1312775 | 1 | DNA-3-methyladenine glycosylase | Proteus mirabilis HI4320 | |
| 20 | group_998 | PMI_RS06320 | 1385154 | 1385792 | 1 | nth | endonuclease III | Proteus mirabilis HI4320 |
