PF00730


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00730, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 21 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00730
Description HhH-GPD superfamily base excision DNA repair protein

Occurence in the database

PF00730 is associated with 21 different proteins (see tab "Protein list" and "Profile")
The 21 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_931 FBDBKF_05055 16994 17635 1 nth endonuclease III Morganella morganii S1
1 group_1617 FBDBKF_10665 100380 101291 -1 alkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase Morganella morganii S1
2 group_1991 FBDBKF_14995 10765 11802 -1 mutY A/G-specific adenine glycosylase Morganella morganii S1
3 group_1991 EHELCC_11250 73104 74141 1 mutY A/G-specific adenine glycosylase Morganella morganii S2
4 group_931 EHELCC_12535 163859 164500 -1 nth endonuclease III Morganella morganii S2
5 group_1617 EHELCC_15000 100370 101281 -1 alkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase Morganella morganii S2
6 group_1991 NLDBIP_11595 73104 74141 1 mutY A/G-specific adenine glycosylase Morganella morganii S4
7 group_931 NLDBIP_12875 163814 164455 -1 nth endonuclease III Morganella morganii S4
8 group_1617 NLDBIP_14830 100370 101281 -1 alkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase Morganella morganii S4
9 group_1991 LHKJJB_11455 73104 74141 1 mutY A/G-specific adenine glycosylase Morganella morganii S3
10 group_931 LHKJJB_12735 163859 164500 -1 nth endonuclease III Morganella morganii S3
11 group_1617 LHKJJB_14515 40445 41356 1 alkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase Morganella morganii S3
12 group_1991 HKOGLL_10065 73104 74141 1 mutY A/G-specific adenine glycosylase Morganella morganii S5
13 group_931 HKOGLL_11350 163859 164500 -1 nth endonuclease III Morganella morganii S5
14 group_1617 HKOGLL_13135 40445 41356 1 alkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase Morganella morganii S5
15 group_931 F4V73_RS05495 1168377 1169018 1 nth endonuclease III Morganella psychrotolerans
16 group_1991 F4V73_RS12455 73940 74977 1 mutY A/G-specific adenine glycosylase Morganella psychrotolerans
17 group_1617 F4V73_RS14375 103365 104273 -1 DNA-3-methyladenine glycosylase 2 Morganella psychrotolerans
18 group_1991 PMI_RS01555 377683 378723 -1 mutY A/G-specific adenine glycosylase Proteus mirabilis HI4320
19 group_1617 PMI_RS05980 1312164 1312775 1 DNA-3-methyladenine glycosylase Proteus mirabilis HI4320
20 group_931 PMI_RS06320 1385154 1385792 1 nth endonuclease III Proteus mirabilis HI4320