Homologs in group_931

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05055 FBDBKF_05055 86.8 Morganella morganii S1 nth endonuclease III
EHELCC_12535 EHELCC_12535 86.8 Morganella morganii S2 nth endonuclease III
NLDBIP_12875 NLDBIP_12875 86.8 Morganella morganii S4 nth endonuclease III
LHKJJB_12735 LHKJJB_12735 86.8 Morganella morganii S3 nth endonuclease III
HKOGLL_11350 HKOGLL_11350 86.8 Morganella morganii S5 nth endonuclease III
F4V73_RS05495 F4V73_RS05495 85.4 Morganella psychrotolerans nth endonuclease III

Distribution of the homologs in the orthogroup group_931

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_931

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AB83 2.31e-141 396 87 0 210 1 nth Endonuclease III Escherichia coli (strain K12)
P0AB84 2.31e-141 396 87 0 210 3 nth Endonuclease III Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P44319 3.77e-129 365 81 0 210 3 nth Endonuclease III Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P57219 1.26e-88 262 59 0 208 3 nth Endonuclease III Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8KA16 4.05e-85 253 55 0 208 3 nth Endonuclease III Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q89AW4 6.26e-78 235 51 0 208 3 nth Endonuclease III Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q92GH4 3.77e-75 228 54 1 201 3 nth Endonuclease III Rickettsia conorii (strain ATCC VR-613 / Malish 7)
O05956 1.88e-73 224 53 0 198 3 nth Endonuclease III Rickettsia prowazekii (strain Madrid E)
O83754 1.89e-72 221 55 0 195 3 nth Endonuclease III Treponema pallidum (strain Nichols)
Q4UK93 7.3e-72 220 52 1 201 3 nth Endonuclease III Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q68W04 7.39e-71 217 51 0 198 3 nth Endonuclease III Rickettsia typhi (strain ATCC VR-144 / Wilmington)
P39788 1.34e-52 171 43 2 214 3 nth Endonuclease III Bacillus subtilis (strain 168)
P46303 1.04e-42 147 41 3 206 1 pdg Ultraviolet N-glycosylase/AP lyase Micrococcus luteus (strain ATCC 4698 / DSM 20030 / JCM 1464 / CCM 169 / CCUG 5858 / IAM 1056 / NBRC 3333 / NCIMB 9278 / NCTC 2665 / VKM Ac-2230)
Q9WYK0 2.61e-39 137 37 0 178 3 nth Endonuclease III Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
P9WQ11 1.14e-38 136 38 0 186 1 nth Endonuclease III Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WQ10 1.14e-38 136 38 0 186 3 nth Endonuclease III Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P63541 1.14e-38 136 38 0 186 3 nth Endonuclease III Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
Q9CB92 1.72e-38 136 36 1 205 3 nth Endonuclease III Mycobacterium leprae (strain TN)
P73715 3.68e-38 134 39 3 200 3 nth Endonuclease III Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q58030 1.83e-25 104 34 2 204 3 nth Endonuclease III Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P54137 1.5e-22 95 31 2 178 1 nth-1 Endonuclease III homolog Caenorhabditis elegans
Q2KID2 4.16e-22 94 29 2 177 2 NTHL1 Endonuclease III-like protein 1 Bos taurus
A7M7B9 4.72e-21 91 27 4 216 2 NTHL1 Endonuclease III-like protein 1 Gallus gallus
P29588 1.04e-20 89 30 2 198 1 mig Thymine/uracil-DNA glycosylase Methanothermobacter thermautotrophicus
P78549 2.89e-20 89 29 2 177 1 NTHL1 Endonuclease III-like protein 1 Homo sapiens
B9DFZ0 4.43e-20 90 31 4 196 2 NTH2 Endonuclease III homolog 2, chloroplastic Arabidopsis thaliana
O35980 1.13e-19 88 28 2 177 2 Nthl1 Endonuclease III-like protein 1 Mus musculus
Q9SIC4 1.49e-19 88 32 5 193 2 NTH1 Endonuclease III homolog 1, chloroplastic Arabidopsis thaliana
Q8SRB8 5.39e-19 85 31 4 188 1 NTH1 Endonuclease III homolog Encephalitozoon cuniculi (strain GB-M1)
Q7LX22 1.52e-14 72 27 5 195 1 PAE3199 Thymine/uracil-DNA glycosylase Pyrobaculum aerophilum (strain ATCC 51768 / DSM 7523 / JCM 9630 / CIP 104966 / NBRC 100827 / IM2)
Q08214 3.86e-14 73 25 4 190 1 NTG2 Endonuclease III homolog 2 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q09907 6.13e-14 72 27 4 181 1 nth1 Endonuclease III homolog Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q9YDP0 3.17e-13 69 23 3 185 1 APE_0875.1 Thymine-DNA glycosylase Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
C8VC05 1.15e-11 66 28 1 135 3 nth1 Endonuclease III homolog Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
P17802 3.52e-10 62 32 3 129 1 mutY Adenine DNA glycosylase Escherichia coli (strain K12)
Q05869 4.25e-09 58 31 3 129 3 mutY Adenine DNA glycosylase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P31378 8.02e-09 58 23 4 196 1 NTG1 Endonuclease III homolog 1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q89A45 1.84e-08 57 24 3 181 3 mutY Adenine DNA glycosylase Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q10159 2.67e-08 56 26 6 206 1 myh1 Adenine DNA glycosylase Schizosaccharomyces pombe (strain 972 / ATCC 24843)
P44320 4.61e-08 55 29 2 127 3 mutY Adenine DNA glycosylase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P9WQ09 7.02e-08 55 26 5 193 1 mutY Adenine DNA glycosylase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WQ08 7.02e-08 55 26 5 193 3 mutY Adenine DNA glycosylase Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q9UIF7 1.81e-07 54 24 4 157 1 MUTYH Adenine DNA glycosylase Homo sapiens
P83847 4.18e-07 52 21 2 183 1 mutY Adenine DNA glycosylase Geobacillus stearothermophilus
P57617 5.05e-07 52 26 3 130 3 mutY Adenine DNA glycosylase Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8R5G2 3.83e-05 47 23 4 159 2 Mutyh Adenine DNA glycosylase Rattus norvegicus
Q99P21 3.98e-05 47 23 5 158 1 Mutyh Adenine DNA glycosylase Mus musculus
Q8K926 4.08e-05 47 24 3 133 3 mutY Adenine DNA glycosylase Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
O31584 0.000117 45 20 2 187 2 mutY Adenine DNA glycosylase Bacillus subtilis (strain 168)
F4JCQ3 0.000133 45 26 4 167 3 At3g47830 Putative DNA glycosylase At3g47830 Arabidopsis thaliana

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS06320
Feature type CDS
Gene nth
Product endonuclease III
Location 1385154 - 1385792 (strand: 1)
Length 639 (nucleotides) / 212 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_931
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00633 Helix-hairpin-helix motif
PF00730 HhH-GPD superfamily base excision DNA repair protein
PF10576 Iron-sulfur binding domain of endonuclease III

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0177 Replication, recombination and repair (L) L Endonuclease III

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K10773 endonuclease III [EC:3.2.2.- 4.2.99.18] Base excision repair -

Protein Sequence

MNQAKRIEILTRLRDNNPHPTTELRFNSPFELLISVLLSAQATDVSVNKATAKLYPVANTPQAMLELGVEGIKSYIKTIGLFNTKAENVIKTCQILVDKHHGQVPENREALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTKFAPGKNVNEVEQKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIEDLCEYTEKTDPQ

Flanking regions ( +/- flanking 50bp)

AAGAACAAGGTTGTGGCAGTCATATTGTTAAAAACTAATTTGTGAGCATAATGAATCAAGCTAAACGTATAGAAATTTTAACTAGGTTGCGGGATAACAATCCGCATCCTACTACTGAGTTAAGATTTAACTCCCCGTTTGAATTATTGATCTCCGTGTTACTCTCTGCACAAGCCACCGATGTTAGTGTTAATAAGGCAACAGCAAAACTTTACCCTGTTGCCAATACACCCCAAGCAATGCTGGAATTAGGTGTTGAGGGGATCAAATCCTATATTAAGACCATTGGCCTATTTAATACAAAAGCTGAGAATGTGATTAAAACCTGCCAAATATTGGTAGATAAACATCATGGCCAAGTTCCTGAAAATAGAGAGGCTTTAGAGGCATTACCCGGTGTCGGTCGTAAAACAGCGAATGTCGTACTTAACACCGCTTTTGGTTGGCCGACCATTGCTGTTGATACACATATCTTTCGCGTGTGTAATCGCACTAAATTTGCACCGGGAAAAAATGTTAATGAAGTGGAACAAAAACTGCTAAAAGTGGTACCGGCAGAATTTAAAGTCGATTGCCACCATTGGCTTATCCTGCATGGTCGTTATACCTGTATTGCCAGAAAACCACGGTGTGGCTCTTGTATTATTGAAGATCTCTGTGAGTATACCGAAAAAACAGATCCACAATAACATTGTGCAAATTTCTCTGTTTTTCTGATGCATATTACTTGCGTCATTAC