Homologs in group_931

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05055 FBDBKF_05055 95.3 Morganella morganii S1 nth endonuclease III
EHELCC_12535 EHELCC_12535 95.3 Morganella morganii S2 nth endonuclease III
NLDBIP_12875 NLDBIP_12875 95.3 Morganella morganii S4 nth endonuclease III
LHKJJB_12735 LHKJJB_12735 95.3 Morganella morganii S3 nth endonuclease III
HKOGLL_11350 HKOGLL_11350 95.3 Morganella morganii S5 nth endonuclease III
PMI_RS06320 PMI_RS06320 85.4 Proteus mirabilis HI4320 nth endonuclease III

Distribution of the homologs in the orthogroup group_931

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_931

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AB83 4e-136 382 86 0 209 1 nth Endonuclease III Escherichia coli (strain K12)
P0AB84 4e-136 382 86 0 209 3 nth Endonuclease III Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P44319 3.92e-123 350 79 0 209 3 nth Endonuclease III Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P57219 1.24e-92 273 60 0 210 3 nth Endonuclease III Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8KA16 1.31e-87 260 57 0 208 3 nth Endonuclease III Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q89AW4 9.67e-76 230 50 0 208 3 nth Endonuclease III Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q92GH4 1.04e-74 227 53 1 201 3 nth Endonuclease III Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q4UK93 9.51e-73 222 52 1 201 3 nth Endonuclease III Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q68W04 3.85e-71 218 50 0 198 3 nth Endonuclease III Rickettsia typhi (strain ATCC VR-144 / Wilmington)
O05956 3e-70 216 50 0 198 3 nth Endonuclease III Rickettsia prowazekii (strain Madrid E)
O83754 6.03e-70 215 54 0 195 3 nth Endonuclease III Treponema pallidum (strain Nichols)
P39788 4.4e-54 175 46 2 206 3 nth Endonuclease III Bacillus subtilis (strain 168)
P46303 1.34e-37 134 40 2 195 1 pdg Ultraviolet N-glycosylase/AP lyase Micrococcus luteus (strain ATCC 4698 / DSM 20030 / JCM 1464 / CCM 169 / CCUG 5858 / IAM 1056 / NBRC 3333 / NCIMB 9278 / NCTC 2665 / VKM Ac-2230)
Q9CB92 1.55e-36 131 36 2 213 3 nth Endonuclease III Mycobacterium leprae (strain TN)
P73715 1.98e-36 130 36 1 203 3 nth Endonuclease III Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q9WYK0 4.16e-36 129 35 0 179 3 nth Endonuclease III Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
P9WQ11 5.86e-35 127 37 1 190 1 nth Endonuclease III Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WQ10 5.86e-35 127 37 1 190 3 nth Endonuclease III Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P63541 5.86e-35 127 37 1 190 3 nth Endonuclease III Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
Q58030 1.63e-21 93 31 2 205 3 nth Endonuclease III Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q2KID2 1.79e-21 93 30 2 177 2 NTHL1 Endonuclease III-like protein 1 Bos taurus
P78549 2.6e-20 89 30 2 177 1 NTHL1 Endonuclease III-like protein 1 Homo sapiens
O35980 9.8e-20 88 29 2 177 2 Nthl1 Endonuclease III-like protein 1 Mus musculus
P54137 1.61e-19 87 29 2 177 1 nth-1 Endonuclease III homolog Caenorhabditis elegans
A7M7B9 3.23e-18 84 25 4 221 2 NTHL1 Endonuclease III-like protein 1 Gallus gallus
B9DFZ0 7.18e-17 81 29 4 191 2 NTH2 Endonuclease III homolog 2, chloroplastic Arabidopsis thaliana
Q8SRB8 1.4e-16 78 29 4 190 1 NTH1 Endonuclease III homolog Encephalitozoon cuniculi (strain GB-M1)
Q9SIC4 2.27e-16 79 28 4 183 2 NTH1 Endonuclease III homolog 1, chloroplastic Arabidopsis thaliana
P29588 3.93e-16 77 28 1 185 1 mig Thymine/uracil-DNA glycosylase Methanothermobacter thermautotrophicus
Q09907 2.69e-13 70 25 2 174 1 nth1 Endonuclease III homolog Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q08214 3.64e-13 70 25 4 187 1 NTG2 Endonuclease III homolog 2 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
C8VC05 2.37e-12 68 28 1 137 3 nth1 Endonuclease III homolog Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
Q7LX22 4.21e-12 66 27 4 190 1 PAE3199 Thymine/uracil-DNA glycosylase Pyrobaculum aerophilum (strain ATCC 51768 / DSM 7523 / JCM 9630 / CIP 104966 / NBRC 100827 / IM2)
Q9YDP0 1.59e-11 64 23 3 186 1 APE_0875.1 Thymine-DNA glycosylase Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
Q05869 7.68e-10 60 31 3 129 3 mutY Adenine DNA glycosylase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P17802 5.69e-09 58 31 3 129 1 mutY Adenine DNA glycosylase Escherichia coli (strain K12)
Q10159 9.33e-09 58 30 4 139 1 myh1 Adenine DNA glycosylase Schizosaccharomyces pombe (strain 972 / ATCC 24843)
P31378 1.97e-07 53 24 4 174 1 NTG1 Endonuclease III homolog 1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P9WQ09 2.64e-07 53 26 5 193 1 mutY Adenine DNA glycosylase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WQ08 2.64e-07 53 26 5 193 3 mutY Adenine DNA glycosylase Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q89A45 2.8e-07 53 25 3 140 3 mutY Adenine DNA glycosylase Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q9UIF7 8.61e-07 52 25 4 160 1 MUTYH Adenine DNA glycosylase Homo sapiens
P83847 1.02e-05 48 26 2 137 1 mutY Adenine DNA glycosylase Geobacillus stearothermophilus
P57617 1.07e-05 48 22 5 180 3 mutY Adenine DNA glycosylase Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8R5G2 2.61e-05 47 24 4 160 2 Mutyh Adenine DNA glycosylase Rattus norvegicus
P44320 0.000101 45 25 2 127 3 mutY Adenine DNA glycosylase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8K926 0.000142 45 23 4 153 3 mutY Adenine DNA glycosylase Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
F4JCQ3 0.000253 44 26 5 168 3 At3g47830 Putative DNA glycosylase At3g47830 Arabidopsis thaliana
Q99P21 0.00055 43 22 3 154 1 Mutyh Adenine DNA glycosylase Mus musculus

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS05495
Feature type CDS
Gene nth
Product endonuclease III
Location 1168377 - 1169018 (strand: 1)
Length 642 (nucleotides) / 213 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_931
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF00633 Helix-hairpin-helix motif
PF00730 HhH-GPD superfamily base excision DNA repair protein
PF10576 Iron-sulfur binding domain of endonuclease III

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0177 Replication, recombination and repair (L) L Endonuclease III

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K10773 endonuclease III [EC:3.2.2.- 4.2.99.18] Base excision repair -

Protein Sequence

MNKEKRIEILTRLRDNNPQPTTELMFSSPFELLISVLLSAQATDVSVNKATRPLYAVANTPQSILALGVDGVKTYIKTIGLFNTKAENVIKTCRMLVELHNSEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTKFAPGKNVDEVEQKLLRVVPAEFKVDCHHWFILHGRYTCIARKPRCGSCIIEDLCEFGEKVYPEE

Flanking regions ( +/- flanking 50bp)

AAGCCATCTTGTCAGATAAAATGATTCAGGATTAATGAGCCAATGTCGTTATGAATAAAGAAAAACGTATTGAAATTCTGACCCGCCTGCGGGATAACAACCCGCAGCCCACCACAGAACTGATGTTCAGTTCGCCGTTTGAACTGCTTATCTCTGTTTTGTTATCCGCTCAGGCGACTGATGTGAGCGTCAATAAAGCCACCCGTCCGCTTTATGCGGTAGCCAACACTCCGCAGTCCATACTCGCGTTGGGTGTGGACGGCGTAAAAACCTATATCAAAACTATCGGGTTATTTAATACTAAAGCTGAAAATGTGATTAAAACCTGCCGGATGCTGGTTGAACTCCATAACAGTGAGGTTCCTGAAGATCGCGCGGCACTTGAAGCGCTGCCCGGTGTCGGGCGGAAAACCGCCAATGTCGTACTCAATACCGCATTCGGCTGGCCGACCATTGCCGTTGATACCCATATTTTCCGGGTCTGTAACCGCACAAAATTTGCCCCCGGTAAAAATGTGGATGAAGTGGAACAAAAATTATTGCGGGTTGTTCCGGCAGAGTTTAAGGTCGACTGTCATCATTGGTTTATACTGCACGGGCGTTATACCTGTATTGCCCGCAAACCGCGCTGCGGCTCATGTATTATTGAAGATTTATGTGAATTCGGCGAAAAAGTCTATCCGGAGGAATAATTCACTGCGGATTAAACAGAAATTGCCCTCTGTGCTTGCGGACAGCGTGA