PF00672

Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF00672
Protein list: lists the 80 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.

Description

External link PF00672
Description HAMP domain

Occurence in the database

PF00672 is associated with 80 different proteins
The 80 proteins are classified into 14 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_559 FBDBKF_00780 141430 143004 -1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S1
1 group_492 FBDBKF_00785 143117 144802 -1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S1
2 group_2624 FBDBKF_03410 85309 86874 1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S1
3 group_66 FBDBKF_09070 30003 32006 -1 Signal transduction histidine kinase regulating phosphoglycerate transport system Morganella morganii S1
4 group_1524 FBDBKF_09510 143912 145654 -1 narX nitrate/nitrite two-component system sensor histidine kinase NarX Morganella morganii S1
5 group_2848 FBDBKF_10245 1153 3087 -1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S1
6 group_1674 FBDBKF_10745 116808 118142 1 envZ two-component system sensor histidine kinase EnvZ Morganella morganii S1
7 group_1812 FBDBKF_12335 130145 131515 1 cpxA envelope stress sensor histidine kinase CpxA Morganella morganii S1
8 group_1981 FBDBKF_14580 10320 11789 1 phoQ two-component system sensor histidine kinase PhoQ Morganella morganii S1
9 group_365 FBDBKF_16475 18096 19457 -1 baeS two-component system sensor histidine kinase BaeS Morganella morganii S1
10 group_3047 FBDBKF_18180 1914 3473 1 Methyl-accepting chemotaxis protein I (Serine chemoreceptor protein) Morganella morganii S1
11 group_492 EHELCC_00760 164066 165751 1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S2
12 group_559 EHELCC_00765 165864 167438 1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S2
13 group_2624 EHELCC_07125 160229 161794 -1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S2
14 group_365 EHELCC_08340 135082 136443 -1 baeS two-component system sensor histidine kinase BaeS Morganella morganii S2
15 group_1524 EHELCC_09900 450 2192 1 narX nitrate/nitrite two-component system sensor histidine kinase NarX Morganella morganii S2
16 group_66 EHELCC_10340 114098 116101 1 Signal transduction histidine kinase regulating phosphoglycerate transport system Morganella morganii S2
17 group_1812 EHELCC_13970 3190 4560 -1 cpxA envelope stress sensor histidine kinase CpxA Morganella morganii S2
18 group_2848 EHELCC_14580 1143 3077 -1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S2
19 group_1674 EHELCC_15080 116798 118132 1 envZ two-component system sensor histidine kinase EnvZ Morganella morganii S2
20 group_1981 EHELCC_15385 40396 41865 1 phoQ two-component system sensor histidine kinase PhoQ Morganella morganii S2
21 group_3047 EHELCC_18215 1787 3346 1 Methyl-accepting chemotaxis protein I (Serine chemoreceptor protein) Morganella morganii S2
22 group_559 NLDBIP_02695 512698 514272 -1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S4
23 group_492 NLDBIP_02700 514385 516070 -1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S4
24 group_2624 NLDBIP_07450 160102 161667 -1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S4
25 group_365 NLDBIP_08665 135082 136443 -1 baeS two-component system sensor histidine kinase BaeS Morganella morganii S4
26 group_66 NLDBIP_10685 92369 94372 1 Signal transduction histidine kinase regulating phosphoglycerate transport system Morganella morganii S4
27 group_2848 NLDBIP_14410 1143 3077 -1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S4
28 group_1674 NLDBIP_14910 116798 118132 1 envZ two-component system sensor histidine kinase EnvZ Morganella morganii S4
29 group_1812 NLDBIP_15065 7127 8497 -1 cpxA envelope stress sensor histidine kinase CpxA Morganella morganii S4
30 group_1981 NLDBIP_15915 40396 41865 1 phoQ two-component system sensor histidine kinase PhoQ Morganella morganii S4
31 group_3047 NLDBIP_18140 1988 3547 1 Methyl-accepting chemotaxis protein I (Serine chemoreceptor protein) Morganella morganii S4
32 group_1524 NLDBIP_19220 448 2190 1 narX nitrate/nitrite two-component system sensor histidine kinase NarX Morganella morganii S4
33 group_559 LHKJJB_04210 119939 121513 -1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S3
34 group_492 LHKJJB_04215 121626 123311 -1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S3
35 group_365 LHKJJB_05600 120716 122077 1 baeS two-component system sensor histidine kinase BaeS Morganella morganii S3
36 group_2624 LHKJJB_06985 123848 125413 -1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S3
37 group_66 LHKJJB_10670 97156 99159 -1 Signal transduction histidine kinase regulating phosphoglycerate transport system Morganella morganii S3
38 group_1674 LHKJJB_14435 23594 24928 -1 envZ two-component system sensor histidine kinase EnvZ Morganella morganii S3
39 group_2848 LHKJJB_14935 138649 140583 1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S3
40 group_1812 LHKJJB_15545 130145 131515 1 cpxA envelope stress sensor histidine kinase CpxA Morganella morganii S3
41 group_1981 LHKJJB_15925 74821 76290 -1 phoQ two-component system sensor histidine kinase PhoQ Morganella morganii S3
42 group_3047 LHKJJB_18335 1826 3385 1 Methyl-accepting chemotaxis protein I (Serine chemoreceptor protein) Morganella morganii S3
43 group_1524 LHKJJB_19150 19879 21621 -1 narX nitrate/nitrite two-component system sensor histidine kinase NarX Morganella morganii S3
44 group_492 HKOGLL_02830 164271 165956 1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S5
45 group_559 HKOGLL_02835 166069 167643 1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S5
46 group_2624 HKOGLL_03945 107974 109539 1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S5
47 group_365 HKOGLL_05315 119673 121034 -1 baeS two-component system sensor histidine kinase BaeS Morganella morganii S5
48 group_1674 HKOGLL_13055 23594 24928 -1 envZ two-component system sensor histidine kinase EnvZ Morganella morganii S5
49 group_2848 HKOGLL_13555 138649 140583 1 tar Methyl-accepting chemotaxis protein (MCP) Morganella morganii S5
50 group_66 HKOGLL_13730 30457 32460 -1 Signal transduction histidine kinase regulating phosphoglycerate transport system Morganella morganii S5
51 group_1812 HKOGLL_14665 116808 118178 1 cpxA envelope stress sensor histidine kinase CpxA Morganella morganii S5
52 group_1981 HKOGLL_15045 74033 75502 -1 phoQ two-component system sensor histidine kinase PhoQ Morganella morganii S5
53 group_3047 HKOGLL_18070 1804 3363 1 Methyl-accepting chemotaxis protein I (Serine chemoreceptor protein) Morganella morganii S5
54 group_1524 HKOGLL_18930 19879 21621 -1 narX nitrate/nitrite two-component system sensor histidine kinase NarX Morganella morganii S5
55 group_365 F4V73_RS02990 634008 635378 -1 baeS two-component system sensor histidine kinase BaeS Morganella psychrotolerans
56 group_719 F4V73_RS03910 828333 829730 -1 Cu(+)/Ag(+) sensor histidine kinase Morganella psychrotolerans
57 group_719 F4V73_RS04495 950883 952220 1 ATP-binding protein Morganella psychrotolerans
58 group_559 F4V73_RS06780 1406352 1407926 -1 methyl-accepting chemotaxis protein Morganella psychrotolerans
59 group_492 F4V73_RS06785 1408042 1409727 -1 methyl-accepting chemotaxis protein Morganella psychrotolerans
60 group_613 F4V73_RS07265 1511877 1513316 -1 HAMP domain-containing sensor histidine kinase Morganella psychrotolerans
61 group_1981 F4V73_RS07375 1538552 1540018 1 phoQ two-component system sensor histidine kinase PhoQ Morganella psychrotolerans
62 group_2488 F4V73_RS10015 108871 110526 -1 methyl-accepting chemotaxis protein Morganella psychrotolerans
63 group_1524 F4V73_RS10460 208798 210498 1 narX nitrate/nitrite two-component system sensor histidine kinase NarX Morganella psychrotolerans
64 group_66 F4V73_RS10875 312776 314785 1 ATP-binding protein Morganella psychrotolerans
65 group_2624 F4V73_RS11490 443332 444897 -1 methyl-accepting chemotaxis protein Morganella psychrotolerans
66 group_2848 F4V73_RS13960 1331 3271 -1 methyl-accepting chemotaxis protein Morganella psychrotolerans
67 group_1674 F4V73_RS14460 120601 121935 1 envZ two-component system sensor histidine kinase EnvZ Morganella psychrotolerans
68 group_1812 F4V73_RS17165 64599 65969 1 cpxA envelope stress sensor histidine kinase CpxA Morganella psychrotolerans
69 group_2488 PMI_RS05695 1239665 1241218 1 methyl-accepting chemotaxis protein Proteus mirabilis HI4320
70 group_365 PMI_RS07745 1695686 1697062 1 baeS two-component system sensor histidine kinase BaeS Proteus mirabilis HI4320
71 group_559 PMI_RS08130 1775601 1777247 -1 methyl-accepting chemotaxis protein Proteus mirabilis HI4320
72 group_492 PMI_RS08135 1777307 1779013 -1 methyl-accepting chemotaxis protein Proteus mirabilis HI4320
73 group_2488 PMI_RS11775 2603326 2604846 -1 methyl-accepting chemotaxis protein Proteus mirabilis HI4320
74 group_66 PMI_RS11905 2628882 2631257 -1 ATP-binding protein Proteus mirabilis HI4320
75 group_2488 PMI_RS13870 3080908 3082599 1 methyl-accepting chemotaxis protein Proteus mirabilis HI4320
76 group_2488 PMI_RS13875 3083055 3084782 1 methyl-accepting chemotaxis protein Proteus mirabilis HI4320
77 group_1674 PMI_RS14295 3172721 3174061 1 envZ two-component system sensor histidine kinase EnvZ Proteus mirabilis HI4320
78 group_1812 PMI_RS15815 3512374 3513741 -1 cpxA envelope stress sensor histidine kinase CpxA Proteus mirabilis HI4320
79 group_1524 PMI_RS17755 3895690 3897519 -1 narX nitrate/nitrite two-component system sensor histidine kinase NarX Proteus mirabilis HI4320