PF00664

Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00664, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 59 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00664
Description ABC transporter transmembrane region

Occurence in the database

PF00664 is associated with 59 different proteins (see tab "Protein list" and "Profile")
The 59 proteins are classified into 9 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_123 FBDBKF_04870 179861 181975 -1 sunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Morganella morganii S1
1 group_184 FBDBKF_07080 79887 81653 -1 cydC cysteine/glutathione ABC transporter ATP-binding protein/permease CydC Morganella morganii S1
2 group_1217 FBDBKF_07085 81656 83425 -1 cydD cysteine/glutathione ABC transporter permease/ATP-binding protein CydD Morganella morganii S1
3 group_1232 FBDBKF_07175 108961 110706 1 msbA lipid A ABC transporter ATP-binding protein/permease MsbA Morganella morganii S1
4 group_2120 FBDBKF_15925 35174 36913 1 mdlB SmdA family multidrug ABC transporter permease/ATP-binding protein Morganella morganii S1
5 group_2121 FBDBKF_15930 36906 38702 1 mdlB SmdB family multidrug efflux ABC transporter permease/ATP-binding protein Morganella morganii S1
6 group_3019 FBDBKF_17900 18508 20274 1 mdlB ABC-type multidrug transport system, ATPase and permease component Morganella morganii S1
7 group_412 FBDBKF_17905 20267 21994 1 mdlB ABC-type multidrug transport system, ATPase and permease component Morganella morganii S1
8 group_1232 EHELCC_03795 75480 77225 -1 msbA lipid A ABC transporter ATP-binding protein/permease MsbA Morganella morganii S2
9 group_1217 EHELCC_03885 102761 104530 1 cydD cysteine/glutathione ABC transporter permease/ATP-binding protein CydD Morganella morganii S2
10 group_184 EHELCC_03890 104533 106299 1 cydC cysteine/glutathione ABC transporter ATP-binding protein/permease CydC Morganella morganii S2
11 group_123 EHELCC_06160 239318 241432 -1 sunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Morganella morganii S2
12 group_412 EHELCC_06430 14382 16109 -1 mdlB ABC-type multidrug transport system, ATPase and permease component Morganella morganii S2
13 group_3019 EHELCC_06435 16102 17868 -1 mdlB ABC-type multidrug transport system, ATPase and permease component Morganella morganii S2
14 group_2120 EHELCC_18525 22613 24352 1 mdlB SmdA family multidrug ABC transporter permease/ATP-binding protein Morganella morganii S2
15 group_2121 EHELCC_18530 24345 26141 1 mdlB SmdB family multidrug efflux ABC transporter permease/ATP-binding protein Morganella morganii S2
16 group_1232 NLDBIP_03795 75276 77021 -1 msbA lipid A ABC transporter ATP-binding protein/permease MsbA Morganella morganii S4
17 group_1217 NLDBIP_03885 102557 104326 1 cydD cysteine/glutathione ABC transporter permease/ATP-binding protein CydD Morganella morganii S4
18 group_184 NLDBIP_03890 104329 106095 1 cydC cysteine/glutathione ABC transporter ATP-binding protein/permease CydC Morganella morganii S4
19 group_123 NLDBIP_06480 280383 282497 -1 sunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Morganella morganii S4
20 group_412 NLDBIP_06750 14255 15982 -1 mdlB ABC-type multidrug transport system, ATPase and permease component Morganella morganii S4
21 group_3019 NLDBIP_06755 15975 17741 -1 mdlB ABC-type multidrug transport system, ATPase and permease component Morganella morganii S4
22 group_2120 NLDBIP_17360 22613 24352 1 mdlB SmdA family multidrug ABC transporter permease/ATP-binding protein Morganella morganii S4
23 group_2121 NLDBIP_17365 24345 26141 1 mdlB SmdB family multidrug efflux ABC transporter permease/ATP-binding protein Morganella morganii S4
24 group_123 LHKJJB_03360 257907 260021 -1 sunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Morganella morganii S3
25 group_1232 LHKJJB_09625 75390 77135 -1 msbA lipid A ABC transporter ATP-binding protein/permease MsbA Morganella morganii S3
26 group_1217 LHKJJB_09715 102671 104440 1 cydD cysteine/glutathione ABC transporter permease/ATP-binding protein CydD Morganella morganii S3
27 group_184 LHKJJB_09720 104443 106209 1 cydC cysteine/glutathione ABC transporter ATP-binding protein/permease CydC Morganella morganii S3
28 group_2121 LHKJJB_17295 30047 31843 -1 mdlB SmdB family multidrug efflux ABC transporter permease/ATP-binding protein Morganella morganii S3
29 group_2120 LHKJJB_17300 31836 33575 -1 mdlB SmdA family multidrug ABC transporter permease/ATP-binding protein Morganella morganii S3
30 group_3019 LHKJJB_18905 18516 20282 1 mdlB ABC-type multidrug transport system, ATPase and permease component Morganella morganii S3
31 group_412 LHKJJB_18910 20275 22002 1 mdlB ABC-type multidrug transport system, ATPase and permease component Morganella morganii S3
32 group_3019 HKOGLL_04635 251900 253666 1 mdlB ABC-type multidrug transport system, ATPase and permease component Morganella morganii S5
33 group_412 HKOGLL_04640 253659 255386 1 mdlB ABC-type multidrug transport system, ATPase and permease component Morganella morganii S5
34 group_123 HKOGLL_06835 179771 181885 -1 sunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain Morganella morganii S5
35 group_184 HKOGLL_09255 84843 86609 -1 cydC cysteine/glutathione ABC transporter ATP-binding protein/permease CydC Morganella morganii S5
36 group_1217 HKOGLL_09260 86612 88381 -1 cydD cysteine/glutathione ABC transporter permease/ATP-binding protein CydD Morganella morganii S5
37 group_1232 HKOGLL_09350 113917 115662 1 msbA lipid A ABC transporter ATP-binding protein/permease MsbA Morganella morganii S5
38 group_2120 HKOGLL_17095 22613 24352 1 mdlB SmdA family multidrug ABC transporter permease/ATP-binding protein Morganella morganii S5
39 group_2121 HKOGLL_17100 24345 26141 1 mdlB SmdB family multidrug efflux ABC transporter permease/ATP-binding protein Morganella morganii S5
40 group_184 F4V73_RS01265 267662 269407 -1 cydC cysteine/glutathione ABC transporter ATP-binding protein/permease CydC Morganella psychrotolerans
41 group_1217 F4V73_RS01270 269410 271179 -1 cydD cysteine/glutathione ABC transporter permease/ATP-binding protein CydD Morganella psychrotolerans
42 group_1232 F4V73_RS01360 297128 298876 1 msbA lipid A ABC transporter ATP-binding protein/permease MsbA Morganella psychrotolerans
43 group_123 F4V73_RS08975 1865416 1867632 -1 type I secretion system permease/ATPase Morganella psychrotolerans
44 group_123 F4V73_RS09455 1994108 1996261 -1 type I secretion system permease/ATPase Morganella psychrotolerans
45 group_123 F4V73_RS09470 1999367 2001472 -1 peptidase domain-containing ABC transporter Morganella psychrotolerans
46 group_123 F4V73_RS13135 242257 244368 1 peptidase domain-containing ABC transporter Morganella psychrotolerans
47 group_2121 F4V73_RS16380 91810 93594 -1 SmdB family multidrug efflux ABC transporter permease/ATP-binding protein Morganella psychrotolerans
48 group_2120 F4V73_RS16385 93587 95326 -1 SmdA family multidrug ABC transporter permease/ATP-binding protein Morganella psychrotolerans
49 group_2120 PMI_RS00600 153510 155255 1 SmdA family multidrug ABC transporter permease/ATP-binding protein Proteus mirabilis HI4320
50 group_2121 PMI_RS00605 155242 157029 1 SmdB family multidrug efflux ABC transporter permease/ATP-binding protein Proteus mirabilis HI4320
51 group_1304 PMI_RS01350 327055 328794 -1 type I secretion system permease/ATPase Proteus mirabilis HI4320
52 group_184 PMI_RS03410 752829 754580 -1 cydC cysteine/glutathione ABC transporter ATP-binding protein/permease CydC Proteus mirabilis HI4320
53 group_1217 PMI_RS03415 754583 756352 -1 cydD cysteine/glutathione ABC transporter permease/ATP-binding protein CydD Proteus mirabilis HI4320
54 group_1232 PMI_RS03530 788571 790316 1 msbA lipid A ABC transporter ATP-binding protein/permease MsbA Proteus mirabilis HI4320
55 group_412 PMI_RS10000 2168452 2170128 1 ABC transporter transmembrane domain-containing protein Proteus mirabilis HI4320
56 group_412 PMI_RS10010 2171509 2173632 1 type I secretion system permease/ATPase Proteus mirabilis HI4320
57 group_3019 PMI_RS12855 2852159 2853925 1 ABC transporter ATP-binding protein Proteus mirabilis HI4320
58 group_412 PMI_RS12860 2853918 2855645 1 ABC transporter ATP-binding protein Proteus mirabilis HI4320