Orthogroup:group_500


Homologs in group_500

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_00950 FBDBKF_00950 Morganella morganii S1 araC AraC-type DNA-binding domain and AraC-containing proteins
EHELCC_00595 EHELCC_00595 Morganella morganii S2 araC AraC-type DNA-binding domain and AraC-containing proteins
NLDBIP_02865 NLDBIP_02865 Morganella morganii S4 araC AraC-type DNA-binding domain and AraC-containing proteins
LHKJJB_04380 LHKJJB_04380 Morganella morganii S3 araC AraC-type DNA-binding domain and AraC-containing proteins
HKOGLL_02665 HKOGLL_02665 Morganella morganii S5 araC AraC-type DNA-binding domain and AraC-containing proteins
F4V73_RS06945 F4V73_RS06945 Morganella psychrotolerans - AraC family transcriptional regulator
F4V73_RS07325 F4V73_RS07325 Morganella psychrotolerans - AraC family transcriptional regulator

Distribution of group_500 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_500 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_500

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_500.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 araC 5
2 - 2

Product

# Product Occurence
1 AraC-type DNA-binding domain and AraC-containing proteins 5
2 AraC family transcriptional regulator 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG4977 7 K Transcription (K) Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain

Pfam domain Annotation(s)

Domain ID Occurences Description
PF06719 7 AraC-type transcriptional regulator N-terminus
PF12833 7 Helix-turn-helix domain

Annotations of the 115 SwissProt hits

Annotation Number of occurrences
Anthranilate 1,2-dioxygenase regulatory protein 1
HTH-type DNA-binding transcriptional activator EutR 2
HTH-type transcriptional activator Btr 1
HTH-type transcriptional activator RhaR 15
HTH-type transcriptional activator RhaS 57
HTH-type transcriptional regulator AlkR 1
HTH-type transcriptional regulator ArgR 1
HTH-type transcriptional regulator CdhR 1
HTH-type transcriptional regulator ExsA 1
HTH-type transcriptional regulator GbdR 2
HTH-type transcriptional regulator GlxA 1
HTH-type transcriptional regulator MtrA 1
HTH-type transcriptional regulator YesS 1
Histidine kinase P4 1
Lactose operon transcription activator 1
Melibiose operon regulatory protein 2
MmsAB operon regulatory protein 1
Msm operon regulatory protein 1
Probable HTH-type transcriptional regulator STM3175 1
Probable thc operon regulatory protein 1
Probable transcriptional regulator LumQ 1
Putative AraC-like transcription regulator 1
Putative HTH-type transcriptional regulator YneL 1
RCS-specific HTH-type transcriptional activator RclR 1
Raffinose operon transcriptional regulatory protein RafR 1
Regulatory protein PchR 1
Regulatory protein SoxS 4
Thermoregulatory protein LcrF 1
Transcriptional activator RamA 1
Transcriptional regulator RamA 1
Uncharacterized HTH-type transcriptional regulator HI_1052 1
Uncharacterized HTH-type transcriptional regulator YdeC 1
Uncharacterized HTH-type transcriptional regulator YdiP 1
Uncharacterized HTH-type transcriptional regulator YisR 1
Uncharacterized HTH-type transcriptional regulator YobQ 1
Uncharacterized HTH-type transcriptional regulator YpdC 1
Uncharacterized HTH-type transcriptional regulator YqhC 1
Virulence regulon transcriptional activator VirF 2

Protein length

Min length 295
Max length 303
Mean length (sd) 296.7 (3.1)
Median length 295.0

Protein length distribution