Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00216, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 28 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link | PF00216 |
---|---|
Description | Bacterial DNA-binding protein |
Occurence in the database
PF00216 is associated with 28 different proteins (see tab "Protein list" and "Profile") |
The 28 proteins are classified into 4 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_1230 | FBDBKF_07165 | 105962 | 106246 | 1 | ihfB | integration host factor subunit beta | Morganella morganii S1 |
1 | group_1805 | FBDBKF_13395 | 57196 | 57492 | -1 | ihfA | integration host factor subunit alpha | Morganella morganii S1 |
2 | group_2114 | FBDBKF_15890 | 29432 | 29716 | 1 | hupB | nucleoid-associated protein HU-beta | Morganella morganii S1 |
3 | group_2303 | FBDBKF_17695 | 34908 | 35180 | 1 | hupA | nucleoid-associated protein HU-alpha | Morganella morganii S1 |
4 | group_1230 | EHELCC_03805 | 79940 | 80224 | -1 | ihfB | integration host factor subunit beta | Morganella morganii S2 |
5 | group_1805 | EHELCC_08700 | 217699 | 217995 | 1 | ihfA | integration host factor subunit alpha | Morganella morganii S2 |
6 | group_2303 | EHELCC_18180 | 34284 | 34556 | 1 | hupA | nucleoid-associated protein HU-alpha | Morganella morganii S2 |
7 | group_2114 | EHELCC_18490 | 16871 | 17155 | 1 | hupB | nucleoid-associated protein HU-beta | Morganella morganii S2 |
8 | group_1230 | NLDBIP_03805 | 79736 | 80020 | -1 | ihfB | integration host factor subunit beta | Morganella morganii S4 |
9 | group_1805 | NLDBIP_09025 | 217699 | 217995 | 1 | ihfA | integration host factor subunit alpha | Morganella morganii S4 |
10 | group_2114 | NLDBIP_17325 | 16871 | 17155 | 1 | hupB | nucleoid-associated protein HU-beta | Morganella morganii S4 |
11 | group_2303 | NLDBIP_17970 | 4181 | 4453 | -1 | hupA | nucleoid-associated protein HU-alpha | Morganella morganii S4 |
12 | group_1805 | LHKJJB_05240 | 39164 | 39460 | -1 | ihfA | integration host factor subunit alpha | Morganella morganii S3 |
13 | group_1230 | LHKJJB_09635 | 79850 | 80134 | -1 | ihfB | integration host factor subunit beta | Morganella morganii S3 |
14 | group_2114 | LHKJJB_17335 | 39033 | 39317 | -1 | hupB | nucleoid-associated protein HU-beta | Morganella morganii S3 |
15 | group_2303 | LHKJJB_18165 | 4181 | 4453 | -1 | hupA | nucleoid-associated protein HU-alpha | Morganella morganii S3 |
16 | group_1805 | HKOGLL_05675 | 202290 | 202586 | 1 | ihfA | integration host factor subunit alpha | Morganella morganii S5 |
17 | group_1230 | HKOGLL_09340 | 110918 | 111202 | 1 | ihfB | integration host factor subunit beta | Morganella morganii S5 |
18 | group_2114 | HKOGLL_17060 | 16871 | 17155 | 1 | hupB | nucleoid-associated protein HU-beta | Morganella morganii S5 |
19 | group_2303 | HKOGLL_18035 | 34284 | 34556 | 1 | hupA | nucleoid-associated protein HU-alpha | Morganella morganii S5 |
20 | group_1230 | F4V73_RS01350 | 293983 | 294267 | 1 | ihfB | integration host factor subunit beta | Morganella psychrotolerans |
21 | group_1805 | F4V73_RS03365 | 718319 | 718615 | 1 | ihfA | integration host factor subunit alpha | Morganella psychrotolerans |
22 | group_2303 | F4V73_RS15075 | 253598 | 253870 | 1 | hupA | nucleoid-associated protein HU-alpha | Morganella psychrotolerans |
23 | group_2114 | F4V73_RS16425 | 101914 | 102189 | -1 | hupB | nucleoid-associated protein HU-beta | Morganella psychrotolerans |
24 | group_2114 | PMI_RS00570 | 147876 | 148151 | 1 | hupB | nucleoid-associated protein HU-beta | Proteus mirabilis HI4320 |
25 | group_1230 | PMI_RS03520 | 785456 | 785743 | 1 | ihfB | integration host factor subunit beta | Proteus mirabilis HI4320 |
26 | group_1805 | PMI_RS05055 | 1105154 | 1105450 | 1 | ihfA | integration host factor subunit alpha | Proteus mirabilis HI4320 |
27 | group_2303 | PMI_RS13685 | 3041856 | 3042128 | -1 | HU family DNA-binding protein | Proteus mirabilis HI4320 |