COG5295
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG5295, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries
within the database. 16 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.
Description
Description | Autotransporter adhesin |
---|---|
Function(s) descr. | Intracellular trafficking, secretion, and vesicular transport (U) Extracellular structures (W) |
Occurence in the database
COG5295 is associated with 16 different proteins (see tab "Protein list" and "Profile") |
The 16 proteins are classified into 2 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_178 | FBDBKF_03960 | 189041 | 191266 | -1 | taaP | trimeric autotransporter adhesin TaaP | Morganella morganii S1 |
1 | group_81 | FBDBKF_06415 | 118169 | 119443 | -1 | smc | Chromosome segregation ATPase Smc | Morganella morganii S1 |
2 | group_178 | EHELCC_06575 | 55837 | 58062 | 1 | taaP | trimeric autotransporter adhesin TaaP | Morganella morganii S2 |
3 | group_81 | EHELCC_09460 | 118741 | 120015 | -1 | smc | Chromosome segregation ATPase Smc | Morganella morganii S2 |
4 | group_178 | NLDBIP_06900 | 55710 | 57935 | 1 | taaP | trimeric autotransporter adhesin TaaP | Morganella morganii S4 |
5 | group_81 | NLDBIP_09840 | 118741 | 120015 | -1 | smc | Chromosome segregation ATPase Smc | Morganella morganii S4 |
6 | group_178 | LHKJJB_06435 | 19456 | 21681 | 1 | taaP | trimeric autotransporter adhesin TaaP | Morganella morganii S3 |
7 | group_81 | LHKJJB_07915 | 97223 | 98497 | 1 | smc | Chromosome segregation ATPase Smc | Morganella morganii S3 |
8 | group_178 | HKOGLL_04495 | 211706 | 213931 | -1 | taaP | trimeric autotransporter adhesin TaaP | Morganella morganii S5 |
9 | group_81 | HKOGLL_07465 | 97223 | 98497 | 1 | smc | Chromosome segregation ATPase Smc | Morganella morganii S5 |
10 | group_178 | F4V73_RS10220 | 153914 | 154744 | -1 | YadA-like family protein | Morganella psychrotolerans | |
11 | group_178 | F4V73_RS14140 | 41434 | 42516 | -1 | YadA-like family protein | Morganella psychrotolerans | |
12 | group_81 | F4V73_RS19530 | 94358 | 95629 | 1 | YadA C-terminal domain-containing protein | Morganella psychrotolerans | |
13 | group_178 | PMI_RS10460 | 2297251 | 2298006 | 1 | aipA | trimeric autotransporter adhesin AipA | Proteus mirabilis HI4320 |
14 | group_81 | PMI_RS10715 | 2356612 | 2358264 | 1 | YadA-like family protein | Proteus mirabilis HI4320 | |
15 | group_178 | PMI_RS12715 | 2811965 | 2814190 | -1 | taaP | trimeric autotransporter adhesin TaaP | Proteus mirabilis HI4320 |