Homologs in group_78

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11 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01590 FBDBKF_01590 38.9 Morganella morganii S1 - Trimeric autotransporter adhesin YadA-like C-terminal membrane anchor domain-containing protein
FBDBKF_06415 FBDBKF_06415 22.3 Morganella morganii S1 smc Chromosome segregation ATPase Smc
EHELCC_02060 EHELCC_02060 38.9 Morganella morganii S2 - Trimeric autotransporter adhesin YadA-like C-terminal membrane anchor domain-containing protein
EHELCC_09460 EHELCC_09460 22.3 Morganella morganii S2 smc Chromosome segregation ATPase Smc
NLDBIP_01400 NLDBIP_01400 38.9 Morganella morganii S4 - Trimeric autotransporter adhesin YadA-like C-terminal membrane anchor domain-containing protein
NLDBIP_09840 NLDBIP_09840 22.3 Morganella morganii S4 smc Chromosome segregation ATPase Smc
LHKJJB_00635 LHKJJB_00635 38.9 Morganella morganii S3 - Trimeric autotransporter adhesin YadA-like C-terminal membrane anchor domain-containing protein
LHKJJB_07915 LHKJJB_07915 22.3 Morganella morganii S3 smc Chromosome segregation ATPase Smc
HKOGLL_00675 HKOGLL_00675 38.9 Morganella morganii S5 - Trimeric autotransporter adhesin YadA-like C-terminal membrane anchor domain-containing protein
HKOGLL_07465 HKOGLL_07465 22.3 Morganella morganii S5 smc Chromosome segregation ATPase Smc
F4V73_RS19530 F4V73_RS19530 23.7 Morganella psychrotolerans - YadA C-terminal domain-containing protein

Distribution of the homologs in the orthogroup group_78

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_78

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P10858 1.01e-08 61 36 2 91 1 yadA Adhesin YadA Yersinia pseudotuberculosis serotype I (strain IP32953)
P31489 1.97e-07 57 35 2 91 1 yadA Adhesin YadA Yersinia enterocolitica
P0C2W0 3.63e-07 56 34 2 91 1 yadA Adhesin YadA Yersinia enterocolitica
A1JUB7 7.01e-07 55 34 2 91 1 yadA Adhesin YadA Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
P02469 0.000422 47 24 6 204 1 Lamb1 Laminin subunit beta-1 Mus musculus
P0DV44 0.000724 45 25 5 163 1 nadA Neisseria adhesin A Neisseria meningitidis serogroup B
A0ELI2 0.000832 45 23 9 231 1 nadA Neisseria adhesin A Neisseria meningitidis serogroup B

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS10715
Feature type CDS
Gene -
Product YadA-like family protein
Location 2356612 - 2358264 (strand: 1)
Length 1653 (nucleotides) / 550 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_78
Orthogroup size 12
N. genomes 7

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Genomic region

Domains

PF03895 YadA-like membrane anchor domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG5295 Intracellular trafficking, secretion, and vesicular transport (U)
Extracellular structures (W)		 UW Autotransporter adhesin

Protein Sequence

MNYNKLFLISFSLIYSANVFSNTDSPLPTDNPSQLGNGSMVESNIGIPSTSTTHLPQPPLMGNRAPVISPSPLPTGNTSQLGNGSMVESSVGSETEPTTHLPQPPLMPHLPQPPLMGYGAPTIGNTSGYRTQFPNTDANPIKTIKAIKEINTYLDMTDPATNYHSKLIGEYISAFISISRPSTSTSSENTVVSLSKPFFDRMSKAIDVDSDEDGSMLVDKSKKDIARTMSSYLENLEADFLETMNDENTSEDENTSEIRLTQMALLHQIQDFKNIVDESIEKGTSFTIVANQDLETAEPLTEIQMITKRLSQPVTRVDIANAYVLLSGKIDNEVGAIANQQQITTETLTLQDNKITKVESDVKKNEGNIAVNREGITKVESIVEKNKEDIQTNKEDIQTNRENINQVKQTADENKKYVKQYLANDFDVNEQSKSLVGHLGSLYAGNKLNTDNINAIRNDLSHFKNETNNRFYKVEKRANQGIASVAAMSNLPFNDAATFSTAMGIGNYRNATAFAWGMQYRINENVKVKASTAWNDANNWVSAGGIGISW

Flanking regions ( +/- flanking 50bp)

TAAAATAAGCCACTTATTTTTATACTTTATATTTTTATAAGGACTTTTTAATGAATTATAATAAATTATTTCTTATTTCTTTCTCTTTAATTTATTCTGCAAATGTTTTTTCTAATACTGATAGCCCATTACCAACAGATAATCCTTCACAATTAGGAAATGGTTCTATGGTAGAATCAAATATAGGTATTCCCTCAACATCAACAACTCATCTACCACAACCACCATTAATGGGTAATCGCGCACCAGTAATTAGCCCAAGCCCATTGCCAACAGGTAATACTTCACAATTAGGAAATGGTTCTATGGTAGAATCAAGTGTAGGTTCAGAAACAGAACCAACGACTCATCTGCCACAACCACCATTAATGCCTCATCTACCACAACCACCATTAATGGGTTATGGCGCACCAACAATAGGTAATACATCAGGATATAGGACACAATTTCCAAATACAGATGCTAATCCAATTAAAACAATTAAAGCAATTAAAGAAATTAACACATACCTTGACATGACTGACCCTGCAACCAATTATCATAGTAAATTGATAGGTGAATACATTTCAGCCTTTATTTCTATTTCTAGACCTTCTACATCTACATCATCTGAAAATACTGTAGTCAGCCTTTCTAAACCTTTTTTTGATCGTATGTCTAAAGCAATAGATGTTGATTCTGATGAAGATGGAAGTATGTTAGTGGATAAAAGTAAAAAGGATATCGCTCGTACTATGTCTTCTTATTTAGAAAATCTAGAAGCAGACTTTTTAGAAACAATGAACGATGAAAATACTAGTGAGGATGAAAATACTAGTGAGATAAGACTAACACAGATGGCATTATTACATCAGATACAAGATTTTAAAAATATTGTTGACGAAAGTATAGAAAAAGGTACCTCTTTTACTATTGTTGCAAATCAAGATCTAGAAACAGCAGAACCATTAACTGAAATCCAAATGATTACTAAGCGATTATCGCAACCAGTAACACGAGTTGATATTGCTAATGCATATGTTTTATTATCAGGAAAAATAGATAATGAAGTTGGAGCTATAGCGAATCAACAACAAATAACTACTGAAACGTTAACTTTACAGGATAATAAAATTACTAAAGTAGAAAGTGATGTGAAAAAAAATGAAGGTAATATAGCTGTTAATAGAGAAGGTATTACTAAAGTAGAAAGTATTGTAGAAAAAAATAAAGAAGATATACAAACAAATAAAGAAGATATACAAACAAATAGAGAAAATATTAATCAAGTTAAACAAACTGCTGACGAAAATAAAAAATATGTAAAGCAATACCTAGCTAATGATTTCGATGTTAATGAACAATCTAAAAGTTTAGTAGGTCATCTTGGCTCTTTATATGCAGGAAATAAGTTAAACACAGATAATATTAATGCCATTAGAAATGATCTTAGCCATTTTAAAAATGAAACCAATAATCGTTTCTATAAAGTTGAAAAGCGCGCTAATCAAGGGATTGCCTCTGTTGCAGCGATGAGTAATTTACCCTTTAATGATGCAGCAACCTTTAGCACCGCAATGGGTATCGGTAATTATCGTAATGCCACAGCATTTGCATGGGGAATGCAATACCGTATCAACGAAAATGTTAAAGTTAAAGCTTCAACCGCTTGGAATGACGCTAACAATTGGGTCTCTGCGGGGGGGATCGGTATTAGTTGGTAATATAAATTTATAAATATAGCGGTAAAGATAAGGAAAGCTAAGTAAAACTC